Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GPY06_RS13965 | Genome accession | NZ_CP046820 |
| Coordinates | 1765027..1765560 (+) | Length | 177 a.a. |
| NCBI ID | WP_000168293.1 | Uniprot ID | A0A067BLG6 |
| Organism | Vibrio metoecus strain 2011V-1015 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1760027..1770560
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY06_RS13950 | uvrA | 1760069..1762891 (-) | 2823 | WP_055028970.1 | excinuclease ABC subunit UvrA | - |
| GPY06_RS13955 | galU | 1763047..1763919 (-) | 873 | WP_032469645.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GPY06_RS13960 | qstR | 1764091..1764735 (-) | 645 | WP_009372851.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GPY06_RS13965 | ssb | 1765027..1765560 (+) | 534 | WP_000168293.1 | single-stranded DNA-binding protein | Machinery gene |
| GPY06_RS13970 | csrD | 1765684..1767696 (+) | 2013 | WP_055028971.1 | RNase E specificity factor CsrD | - |
| GPY06_RS13975 | - | 1767710..1769152 (+) | 1443 | WP_055028225.1 | PilN domain-containing protein | - |
| GPY06_RS13980 | gspM | 1769149..1769799 (+) | 651 | WP_158120257.1 | type II secretion system protein GspM | - |
| GPY06_RS13985 | - | 1769813..1770112 (+) | 300 | WP_418872385.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19715.93 Da Isoelectric Point: 5.7626
>NTDB_id=408371 GPY06_RS13965 WP_000168293.1 1765027..1765560(+) (ssb) [Vibrio metoecus strain 2011V-1015]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYA
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYA
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=408371 GPY06_RS13965 WP_000168293.1 1765027..1765560(+) (ssb) [Vibrio metoecus strain 2011V-1015]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AGTGGCACCGTGTGACGCTGTATGGAAAATTAGCCGAAGTGGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTCTATATT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAAGATCGTTATTCAACTGAAGTGGTTGTACAAGGTTA
CAATGGCATCATGCAGATGCTGGGTGGCCGTACTCAACAAGGTGGAATGCCTGCTCAGCAAGGCGGTATGAATGCACCAC
AGCAAGGTGGTTGGGGACAACCTCAGCAGCCAGCGAAGCAGCATCAGCCAATGCAACAATCGGCACCTCAACAGTATGCT
CAGCCGCAATACAACGAGCCACCGATGGATTTTGATGACGACATCCCATTCTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AGTGGCACCGTGTGACGCTGTATGGAAAATTAGCCGAAGTGGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTCTATATT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAAGATCGTTATTCAACTGAAGTGGTTGTACAAGGTTA
CAATGGCATCATGCAGATGCTGGGTGGCCGTACTCAACAAGGTGGAATGCCTGCTCAGCAAGGCGGTATGAATGCACCAC
AGCAAGGTGGTTGGGGACAACCTCAGCAGCCAGCGAAGCAGCATCAGCCAATGCAACAATCGGCACCTCAACAGTATGCT
CAGCCGCAATACAACGAGCCACCGATGGATTTTGATGACGACATCCCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
96.067 |
100 |
0.966 |
| ssb | Glaesserella parasuis strain SC1401 |
52.747 |
100 |
0.542 |
| ssb | Neisseria meningitidis MC58 |
47.568 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
47.486 |
100 |
0.48 |