Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY06_RS13960 Genome accession   NZ_CP046820
Coordinates   1764091..1764735 (-) Length   214 a.a.
NCBI ID   WP_009372851.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759091..1769735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS13950 uvrA 1760069..1762891 (-) 2823 WP_055028970.1 excinuclease ABC subunit UvrA -
  GPY06_RS13955 galU 1763047..1763919 (-) 873 WP_032469645.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY06_RS13960 qstR 1764091..1764735 (-) 645 WP_009372851.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY06_RS13965 ssb 1765027..1765560 (+) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  GPY06_RS13970 csrD 1765684..1767696 (+) 2013 WP_055028971.1 RNase E specificity factor CsrD -
  GPY06_RS13975 - 1767710..1769152 (+) 1443 WP_055028225.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24862.75 Da        Isoelectric Point: 9.7352

>NTDB_id=408370 GPY06_RS13960 WP_009372851.1 1764091..1764735(-) (qstR) [Vibrio metoecus strain 2011V-1015]
MQRANYARTIYLLTTQPETLHPNIQAAITKLNLPVPIIEPERLLREYQSDKHKILLLDHSESNAIRQKLGPLKLTSPYFE
TILFNVEKRLKTEDLLTYGNLKGLFYANEETGFMAHGLGEIINGQNWLPRHVSNQLLHYYRYAFQTHQTQVTIDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408370 GPY06_RS13960 WP_009372851.1 1764091..1764735(-) (qstR) [Vibrio metoecus strain 2011V-1015]
ATGCAACGAGCCAACTACGCACGCACTATTTACTTACTCACAACTCAACCCGAGACTTTACATCCCAATATTCAGGCGGC
GATAACCAAACTCAATCTTCCAGTTCCGATCATTGAACCAGAACGCCTACTGCGCGAATACCAGTCTGATAAACACAAAA
TTTTACTGCTCGACCATAGTGAAAGTAACGCCATTCGCCAGAAATTAGGCCCTCTAAAACTCACCAGCCCATACTTCGAA
ACGATTTTATTCAATGTGGAAAAACGCTTAAAAACGGAAGATTTACTCACCTACGGGAATTTAAAAGGCTTGTTCTATGC
TAATGAAGAAACTGGCTTTATGGCACATGGATTAGGTGAAATCATTAATGGACAAAACTGGTTACCACGCCATGTAAGTA
ACCAACTGCTGCATTATTACCGCTATGCGTTTCAAACTCATCAAACACAAGTAACCATTGACCTCACCGCTCGTGAAATC
CAAATTTTACGCTGCTTACAAACGGGGGCTTCCAATATGCAAATCGCAGAGAGCTTGTTTATCAGTGAGTTCACAGTGAA
ATCGCACCTTTATCAGATATTTAAAAAGTTAAATGTAAAAAACAGAGTCAAAGCCATTGCTTGGGTAAATCAGAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

90.187

100

0.902
  qstR Vibrio parahaemolyticus RIMD 2210633

50.233

100

0.505
  qstR Vibrio campbellii strain DS40M4

50.467

100

0.505

Multiple sequence alignment