Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY06_RS07685 Genome accession   NZ_CP046820
Coordinates   450264..450575 (-) Length   103 a.a.
NCBI ID   WP_055027781.1    Uniprot ID   A0A0Q0MBX6
Organism   Vibrio metoecus strain 2011V-1015     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445264..455575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS07660 lapB 445492..446661 (-) 1170 WP_000889972.1 lipopolysaccharide assembly protein LapB -
  GPY06_RS07665 - 446674..446955 (-) 282 WP_000691489.1 LapA family protein -
  GPY06_RS07670 ihfB 447100..447378 (-) 279 WP_000167341.1 integration host factor subunit beta -
  GPY06_RS07675 rpsA 447631..449301 (-) 1671 WP_158119774.1 30S ribosomal protein S1 -
  GPY06_RS07680 cmk 449410..450087 (-) 678 WP_000094754.1 (d)CMP kinase -
  GPY06_RS07685 comEA 450264..450575 (-) 312 WP_055027781.1 ComEA family DNA-binding protein Machinery gene
  GPY06_RS07690 ppiD 450709..452568 (-) 1860 WP_095470245.1 peptidylprolyl isomerase -
  GPY06_RS07695 - 452721..452993 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  GPY06_RS07700 lon 453169..455538 (-) 2370 WP_055030048.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10915.77 Da        Isoelectric Point: 4.7405

>NTDB_id=408350 GPY06_RS07685 WP_055027781.1 450264..450575(-) (comEA) [Vibrio metoecus strain 2011V-1015]
MQFKTKLITLLLSLCLPTLPVLASAEDTVPAAQVEEGIDITVNINTASAEELATLLKGIGVKKAQAIVEYREANGPFLTI
DDLAKVKGIGDATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=408350 GPY06_RS07685 WP_055027781.1 450264..450575(-) (comEA) [Vibrio metoecus strain 2011V-1015]
ATGCAATTCAAAACGAAATTAATCACACTGCTACTTTCACTCTGCTTGCCAACACTGCCAGTATTGGCAAGCGCGGAGGA
CACAGTGCCTGCAGCACAAGTCGAAGAAGGCATTGATATTACTGTGAATATTAATACGGCTTCGGCAGAAGAGTTAGCCA
CCTTACTAAAAGGCATTGGTGTAAAGAAAGCGCAAGCGATAGTGGAATATCGTGAAGCAAATGGGCCTTTCTTGACTATT
GATGACCTCGCGAAGGTAAAAGGAATTGGTGACGCGACCGTGCGTAATAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0MBX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

84.466

100

0.845
  comEA Vibrio cholerae strain A1552

84.466

100

0.845
  comEA Vibrio parahaemolyticus RIMD 2210633

59.375

93.204

0.553
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comEA Legionella pneumophila str. Paris

38.614

98.058

0.379
  comEA Legionella pneumophila strain ERS1305867

38.614

98.058

0.379

Multiple sequence alignment