Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPX95_RS07505 Genome accession   NZ_CP046817
Coordinates   1640365..1641888 (+) Length   507 a.a.
NCBI ID   WP_158160112.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1635365..1646888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS07490 ilvE 1636940..1637878 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  GPX95_RS07495 ilvM 1637890..1638174 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  GPX95_RS07500 ilvG 1638186..1639832 (-) 1647 WP_158160110.1 acetolactate synthase 2 catalytic subunit -
  GPX95_RS07505 comM 1640365..1641888 (+) 1524 WP_158160112.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPX95_RS07510 - 1641978..1642862 (+) 885 WP_000881893.1 acyltransferase -
  GPX95_RS07515 - 1642936..1643541 (-) 606 WP_055029897.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPX95_RS07520 - 1643573..1644559 (-) 987 WP_158120755.1 serine/threonine protein kinase -
  GPX95_RS07525 ccoG 1644607..1646031 (-) 1425 WP_000076157.1 cytochrome c oxidase accessory protein CcoG -
  GPX95_RS07530 - 1646293..1646559 (-) 267 WP_055031360.1 DUF1040 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55015.13 Da        Isoelectric Point: 8.0993

>NTDB_id=408315 GPX95_RS07505 WP_158160112.1 1640365..1641888(+) (comM) [Vibrio metoecus strain 06-2478]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQEVIHTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVLAARERMLVRSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=408315 GPX95_RS07505 WP_158160112.1 1640365..1641888(+) (comM) [Vibrio metoecus strain 06-2478]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTTACGGTTGAGGTTCACATCAGTAA
TGGAATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACGGTAAAAGAGTCACGCGATCGAGTGCGTAGTGCGATCA
TTAATTCTCGGTTTGAGTTTCCAGCGAAACGCATTACGGTCAATTTAGCCCCTGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCAGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCACAGTAATGGTGATCAGGCGGCGTTAGTCGGGAGTGAGCGGCATAAATCAGCGCAAAGTCTA
CTCGAAGTGTGCGCGGACCTGTGTGGTCAGCAAACCCTATCTTTGTTTCAAAGTTCGCCTAGTGTGCAGGAAGTGATCCA
TACGCGCGATCTGCAAGACATCATTGGTCAACAGCAAGGCAAACGTGCGTTGGAAATTGCTGCAGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACTATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCGATGGAAACAGCCTCGATTGCGTCCCTCACGCAGCAAGAGATTAACCAACACAACTGGAAGCTACGCCCTTT
TCGTGCGCCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGTGGCGGCACCATTCCGCGCCCCGGTGAAATTTCCCTCG
CCCATAATGGTTTGCTGTTTTTGGATGAAATGCCGGAGTTTGAGCGCAAAGTGCTGGATTCTCTGCGTGAACCGCTGGAA
TCTGGAGAGATCGTGATTTCTCGTGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAACTGGTCGGCGCGTTAAATCC
AAGCCCAACTGGTTACTACGAGGGCAGTCAGGCGCGTGCTAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTCTCTG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCGGCGTTACCAAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACTGCGGCTGTGCGCCAGCGAGTGTTAGCTGCTCGGGAGCGAATGCTTGTACGTTCTGGTAAGGTGAATGC
CTTGCTGCAAAGCCGAGAAATTGAACAATATTGCCCTTTGCTTAAAGCCGATGCTGAGTTTTTGGAAAGTGCGCTGCATC
GCTTGGGTTTATCGATTCGGGCTTACCATCGCATCATCAAAGTGGCGCGTACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAAAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

98.422

100

0.984
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.387

100

0.677
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

50.806

97.83

0.497
  comM Legionella pneumophila strain ERS1305867

50.806

97.83

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment