Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   H0A38_RS00345 Genome accession   NZ_CP059048
Coordinates   70238..71023 (-) Length   261 a.a.
NCBI ID   WP_129881250.1    Uniprot ID   -
Organism   Lactococcus lactis strain LAC460     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 65238..76023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS00320 (H0A38_00320) - 65838..67007 (+) 1170 WP_017863957.1 ring-cleaving dioxygenase -
  H0A38_RS00325 (H0A38_00325) - 67018..67608 (+) 591 WP_003132255.1 flavin reductase family protein -
  H0A38_RS00330 (H0A38_00330) rpmG 67688..67837 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  H0A38_RS00335 (H0A38_00335) rpmF 67867..68040 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  H0A38_RS00340 (H0A38_00340) - 68404..70185 (+) 1782 WP_023189496.1 heavy metal translocating P-type ATPase -
  H0A38_RS00345 (H0A38_00345) spo0J 70238..71023 (-) 786 WP_129881250.1 ParB/RepB/Spo0J family partition protein Regulator
  H0A38_RS00350 (H0A38_00350) rarA 71078..72337 (-) 1260 WP_010905110.1 replication-associated recombination protein A Machinery gene
  H0A38_RS00355 (H0A38_00355) - 72381..72869 (-) 489 WP_012896945.1 GNAT family N-acetyltransferase -
  H0A38_RS00360 (H0A38_00360) - 73021..73488 (+) 468 WP_010905112.1 DUF3013 family protein -
  H0A38_RS00365 (H0A38_00365) - 73518..75071 (+) 1554 WP_058205583.1 ABC-F family ATP-binding cassette domain-containing protein -
  H0A38_RS00370 (H0A38_00370) - 75202..75486 (+) 285 WP_010905114.1 hypothetical protein -
  H0A38_RS00375 (H0A38_00375) - 75523..76011 (+) 489 WP_058222948.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29785.65 Da        Isoelectric Point: 9.5731

>NTDB_id=408310 H0A38_RS00345 WP_129881250.1 70238..71023(-) (spo0J) [Lactococcus lactis strain LAC460]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLASLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKVTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIHFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=408310 H0A38_RS00345 WP_129881250.1 70238..71023(-) (spo0J) [Lactococcus lactis strain LAC460]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTAGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAACCCACTAGAAGAGTC
CAAAAGCTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAAGTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAACAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCACTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

47.656

98.084

0.467

Multiple sequence alignment