Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GPX95_RS05930 | Genome accession | NZ_CP046817 |
| Coordinates | 1311389..1311922 (-) | Length | 177 a.a. |
| NCBI ID | WP_000168293.1 | Uniprot ID | A0A067BLG6 |
| Organism | Vibrio metoecus strain 06-2478 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1306389..1316922
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX95_RS05910 | - | 1306838..1307136 (-) | 299 | Protein_1144 | MSHA biogenesis protein MshK | - |
| GPX95_RS05915 | gspM | 1307150..1307800 (-) | 651 | WP_055031012.1 | type II secretion system protein GspM | - |
| GPX95_RS05920 | - | 1307797..1309239 (-) | 1443 | WP_055028225.1 | PilN domain-containing protein | - |
| GPX95_RS05925 | csrD | 1309253..1311211 (-) | 1959 | WP_233267678.1 | RNase E specificity factor CsrD | - |
| GPX95_RS05930 | ssb | 1311389..1311922 (-) | 534 | WP_000168293.1 | single-stranded DNA-binding protein | Machinery gene |
| GPX95_RS05935 | qstR | 1312214..1312858 (+) | 645 | WP_009372851.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GPX95_RS05940 | galU | 1313030..1313902 (+) | 873 | WP_032469645.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GPX95_RS05945 | uvrA | 1314058..1316880 (+) | 2823 | WP_055028970.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19715.93 Da Isoelectric Point: 5.7626
>NTDB_id=408310 GPX95_RS05930 WP_000168293.1 1311389..1311922(-) (ssb) [Vibrio metoecus strain 06-2478]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYA
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYA
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=408310 GPX95_RS05930 WP_000168293.1 1311389..1311922(-) (ssb) [Vibrio metoecus strain 06-2478]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AGTGGCACCGTGTGACGCTGTATGGAAAATTAGCCGAAGTGGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTCTATATT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAAGATCGTTATTCAACTGAAGTGGTTGTACAAGGTTA
CAATGGCATCATGCAGATGCTGGGTGGCCGTACTCAACAAGGTGGAATGCCTGCTCAGCAAGGCGGTATGAATGCACCAC
AGCAAGGTGGTTGGGGACAACCTCAGCAGCCAGCGAAGCAGCATCAGCCAATGCAACAATCGGCACCTCAACAGTATGCT
CAGCCGCAATACAACGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AGTGGCACCGTGTGACGCTGTATGGAAAATTAGCCGAAGTGGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTCTATATT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAAGATCGTTATTCAACTGAAGTGGTTGTACAAGGTTA
CAATGGCATCATGCAGATGCTGGGTGGCCGTACTCAACAAGGTGGAATGCCTGCTCAGCAAGGCGGTATGAATGCACCAC
AGCAAGGTGGTTGGGGACAACCTCAGCAGCCAGCGAAGCAGCATCAGCCAATGCAACAATCGGCACCTCAACAGTATGCT
CAGCCGCAATACAACGAGCCGCCAATGGATTTTGATGACGACATCCCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
96.067 |
100 |
0.966 |
| ssb | Glaesserella parasuis strain SC1401 |
52.747 |
100 |
0.542 |
| ssb | Neisseria meningitidis MC58 |
47.568 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
47.486 |
100 |
0.48 |