Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPX95_RS05935 Genome accession   NZ_CP046817
Coordinates   1312214..1312858 (+) Length   214 a.a.
NCBI ID   WP_009372851.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307214..1317858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS05920 - 1307797..1309239 (-) 1443 WP_055028225.1 PilN domain-containing protein -
  GPX95_RS05925 csrD 1309253..1311211 (-) 1959 WP_233267678.1 RNase E specificity factor CsrD -
  GPX95_RS05930 ssb 1311389..1311922 (-) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  GPX95_RS05935 qstR 1312214..1312858 (+) 645 WP_009372851.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX95_RS05940 galU 1313030..1313902 (+) 873 WP_032469645.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX95_RS05945 uvrA 1314058..1316880 (+) 2823 WP_055028970.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24862.75 Da        Isoelectric Point: 9.7352

>NTDB_id=408311 GPX95_RS05935 WP_009372851.1 1312214..1312858(+) (qstR) [Vibrio metoecus strain 06-2478]
MQRANYARTIYLLTTQPETLHPNIQAAITKLNLPVPIIEPERLLREYQSDKHKILLLDHSESNAIRQKLGPLKLTSPYFE
TILFNVEKRLKTEDLLTYGNLKGLFYANEETGFMAHGLGEIINGQNWLPRHVSNQLLHYYRYAFQTHQTQVTIDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408311 GPX95_RS05935 WP_009372851.1 1312214..1312858(+) (qstR) [Vibrio metoecus strain 06-2478]
ATGCAACGAGCCAACTACGCACGCACTATTTACTTACTCACAACTCAACCCGAAACTTTACATCCCAATATTCAGGCGGC
GATAACCAAACTCAATCTTCCAGTTCCGATCATTGAACCAGAACGCCTACTGCGCGAATACCAGTCTGATAAACACAAAA
TTTTACTGCTCGACCATAGTGAAAGTAACGCCATTCGCCAGAAATTAGGCCCTCTAAAACTCACCAGCCCATACTTCGAA
ACAATTTTATTCAATGTGGAAAAACGCTTAAAAACGGAAGATTTACTCACCTACGGGAATTTAAAAGGCTTGTTCTATGC
TAATGAAGAAACTGGCTTTATGGCACATGGATTAGGTGAAATCATTAATGGACAAAACTGGTTACCACGCCATGTAAGTA
ACCAACTGCTGCATTATTACCGCTATGCGTTTCAAACTCATCAAACACAAGTAACCATTGACCTCACCGCTCGTGAAATC
CAAATTTTACGCTGCTTACAAACGGGGGCTTCCAATATGCAAATCGCAGAGAGCTTGTTTATCAGTGAGTTCACAGTGAA
ATCGCACCTTTATCAGATATTTAAAAAGTTAAATGTAAAAAACAGAGTCAAAGCCATTGCTTGGGTAAATCAGAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

90.187

100

0.902
  qstR Vibrio parahaemolyticus RIMD 2210633

50.233

100

0.505
  qstR Vibrio campbellii strain DS40M4

50.467

100

0.505

Multiple sequence alignment