Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPX87_RS07660 Genome accession   NZ_CP046815
Coordinates   1630418..1630942 (+) Length   174 a.a.
NCBI ID   WP_078926476.1    Uniprot ID   A0A1T4QEU1
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1625418..1635942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS07650 galU 1628371..1629240 (-) 870 WP_078926474.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX87_RS07655 qstR 1629481..1630131 (-) 651 WP_078926475.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX87_RS07660 ssb 1630418..1630942 (+) 525 WP_078926476.1 single-stranded DNA-binding protein Machinery gene
  GPX87_RS07665 csrD 1631122..1633116 (+) 1995 WP_078926477.1 RNase E specificity factor CsrD -
  GPX87_RS07670 - 1633123..1634568 (+) 1446 WP_078926478.1 MSHA biogenesis protein MshI -
  GPX87_RS07675 gspM 1634568..1635221 (+) 654 WP_078926608.1 type II secretion system protein GspM -
  GPX87_RS07680 - 1635238..1635522 (+) 285 WP_115174067.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19419.38 Da        Isoelectric Point: 5.2581

>NTDB_id=408275 GPX87_RS07660 WP_078926476.1 1630418..1630942(+) (ssb) [Vibrio cincinnatiensis strain 1398-82]
MATRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQREKTEWHRVSVFGKTAEFIGEYAKKGTQVYI
DGQLQTRKWQDQQGQERYTTEVVVRWPTGEAQILGNRGQQSGSPAQGGMNQGQQSNWGQPQQPAAHSSRPPQQPAASQPQ
YNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=408275 GPX87_RS07660 WP_078926476.1 1630418..1630942(+) (ssb) [Vibrio cincinnatiensis strain 1398-82]
ATGGCAACCCGTGGTGTGAACAAAGTTATCTTGATCGGCAACTTAGGCCAAGATCCAGAGGTTCGCTATATGCCGAGTGG
CGATGCGATGGTCAACTTGACTGTGGCAACTTCAGAAACTTGGCGTGATAAAGCGACCGGCGAACAACGTGAAAAAACAG
AATGGCATCGTGTCTCTGTATTTGGTAAAACCGCTGAATTTATTGGTGAATATGCCAAAAAAGGCACACAAGTCTATATT
GATGGACAACTACAAACTCGTAAATGGCAAGACCAGCAAGGCCAAGAGAGATACACCACTGAGGTTGTCGTTCGTTGGCC
AACAGGTGAAGCTCAGATCTTAGGCAATCGAGGTCAACAAAGTGGTTCTCCAGCACAAGGTGGCATGAATCAAGGTCAAC
AAAGTAACTGGGGGCAGCCACAGCAGCCGGCGGCTCATTCTTCTCGACCACCGCAACAGCCTGCGGCTTCTCAGCCTCAA
TACAATGAACCACCAATGGATTTTGACGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4QEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.596

100

0.753
  ssb Glaesserella parasuis strain SC1401

50.556

100

0.523
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.471
  ssb Neisseria meningitidis MC58

45.763

100

0.466

Multiple sequence alignment