Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPX87_RS07655 Genome accession   NZ_CP046815
Coordinates   1629481..1630131 (-) Length   216 a.a.
NCBI ID   WP_078926475.1    Uniprot ID   A0A1T4QER8
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624481..1635131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS07645 uvrA 1625411..1628236 (-) 2826 WP_078926473.1 excinuclease ABC subunit UvrA -
  GPX87_RS07650 galU 1628371..1629240 (-) 870 WP_078926474.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX87_RS07655 qstR 1629481..1630131 (-) 651 WP_078926475.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX87_RS07660 ssb 1630418..1630942 (+) 525 WP_078926476.1 single-stranded DNA-binding protein Machinery gene
  GPX87_RS07665 csrD 1631122..1633116 (+) 1995 WP_078926477.1 RNase E specificity factor CsrD -
  GPX87_RS07670 - 1633123..1634568 (+) 1446 WP_078926478.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25166.13 Da        Isoelectric Point: 9.9102

>NTDB_id=408274 GPX87_RS07655 WP_078926475.1 1629481..1630131(-) (qstR) [Vibrio cincinnatiensis strain 1398-82]
MPRSNYTRTIYYLTLDEKAATPKILSQAIEQLAIPIPKIEPEQLVNLYQHSKHKILLFDFQEHEQIRQRLAPLKLTSSHL
EIILFNVDKRLHTDTLLSFGHLKGVFYQTETSANLTNGLAEIINGQNWLPRHVSNQLLHYYRYIFQEHQIKATINLTARE
LQILRCLQTGASNMLIAESLFISEFTVKSHLYQIFKKISVKNRTQAIAWANQRILS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=408274 GPX87_RS07655 WP_078926475.1 1629481..1630131(-) (qstR) [Vibrio cincinnatiensis strain 1398-82]
ATGCCAAGATCAAATTATACAAGAACCATCTACTACCTTACTTTAGATGAGAAAGCCGCTACCCCAAAAATTCTCAGTCA
AGCAATAGAACAACTTGCTATCCCTATTCCAAAAATTGAACCAGAACAACTCGTCAATCTTTATCAGCACTCAAAACACA
AAATTTTACTCTTTGATTTTCAGGAACACGAACAAATTCGGCAACGTCTTGCCCCCTTAAAACTAACGAGTTCACATCTG
GAAATCATTCTATTTAATGTAGATAAACGTTTACATACAGATACGTTGTTAAGTTTTGGCCATCTGAAAGGCGTTTTTTA
TCAAACAGAAACGTCAGCTAACTTAACAAATGGGCTAGCAGAAATTATCAATGGGCAAAATTGGTTGCCACGCCATGTCT
CTAACCAATTGTTACACTATTACCGTTACATTTTTCAAGAGCATCAAATTAAAGCAACGATTAATCTAACCGCAAGAGAA
CTTCAGATTTTACGCTGCTTACAAACAGGAGCCTCCAATATGCTCATTGCAGAAAGCTTATTCATTAGCGAATTTACGGT
AAAATCCCACCTATACCAAATATTTAAGAAAATATCGGTTAAAAACCGAACCCAAGCAATTGCGTGGGCTAATCAACGTA
TCTTGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4QER8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

67.907

99.537

0.676
  qstR Vibrio campbellii strain DS40M4

51.152

100

0.514
  qstR Vibrio parahaemolyticus RIMD 2210633

50.691

100

0.509

Multiple sequence alignment