Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPX87_RS06295 Genome accession   NZ_CP046815
Coordinates   1338648..1340174 (+) Length   508 a.a.
NCBI ID   WP_078927471.1    Uniprot ID   A0A1T4SAT2
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1333648..1345174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS06280 ilvE 1335277..1336215 (-) 939 WP_078927474.1 branched-chain-amino-acid transaminase -
  GPX87_RS06285 ilvM 1336227..1336511 (-) 285 WP_078927473.1 acetolactate synthase 2 small subunit -
  GPX87_RS06290 ilvG 1336522..1338168 (-) 1647 WP_078927472.1 acetolactate synthase 2 catalytic subunit -
  GPX87_RS06295 comM 1338648..1340174 (+) 1527 WP_078927471.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPX87_RS06300 - 1340314..1340913 (-) 600 WP_078927470.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPX87_RS06305 - 1340944..1341930 (-) 987 WP_078927485.1 serine/threonine protein kinase -
  GPX87_RS06310 ccoG 1341979..1343376 (-) 1398 WP_078927469.1 cytochrome c oxidase accessory protein CcoG -
  GPX87_RS06315 - 1343593..1343859 (-) 267 WP_078927468.1 YihD family protein -
  GPX87_RS06320 - 1344044..1344211 (-) 168 WP_115174042.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55814.02 Da        Isoelectric Point: 8.7837

>NTDB_id=408271 GPX87_RS06295 WP_078927471.1 1338648..1340174(+) (comM) [Vibrio cincinnatiensis strain 1398-82]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFNLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQLPLNHLERYEFIGELALSGEIRRVKGVLPAALAAHKAKRSLVVPQENGDQAALVSEGLHRSAQTL
IEVCADLCGQKNLTLFQSNKQHQPLNHQRDLQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTEQDINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQVILRYLSRLSGPLLDRFDMSIEIPALPKGTLSQGGDR
GENTETVRQRVLVARERMIARSGKVNALLQSREIETYCRLHKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEVD
IQRTHLAEALGYRSMDRLLKQLSAQAVF

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=408271 GPX87_RS06295 WP_078927471.1 1338648..1340174(+) (comM) [Vibrio cincinnatiensis strain 1398-82]
ATGGGACTTGCGATTATCCATAGTCGAGCCAGCATAGGGGTTCAAGCACCAGCGGTGACCGTTGAGGTTCATATCAGTAA
TGGTATGCCCGGATTTAATCTGGTTGGTCTACCGGAAACTACGGTGAAAGAGTCACGGGATCGAGTGCGTAGCGCCATCA
TTAATTCTCGCTTTGAATTTCCTGCCAAACGAATTACCGTAAATTTAGCGCCAGCAGATCTACCAAAAGAAGGTGGGCGG
TTTGATCTGCCGATCGCATTAGGTATTTTAGCCGCTTCAGAACAATTACCTCTTAATCATCTTGAGCGTTATGAATTTAT
TGGTGAACTGGCTTTATCCGGTGAAATTCGGCGGGTGAAAGGGGTTTTACCCGCCGCTTTGGCCGCTCACAAAGCCAAAC
GTAGTTTAGTGGTGCCACAAGAGAATGGCGATCAGGCTGCGCTGGTCAGTGAGGGCTTGCATAGATCGGCACAGACACTC
ATTGAGGTTTGTGCCGATCTGTGTGGTCAGAAAAACTTGACGCTTTTTCAAAGTAATAAACAGCATCAACCGTTGAATCA
TCAACGCGATCTACAAGATATTATTGGTCAGCAACAAGGGAAGCGTGCATTAGAAATTGCGGCGGCAGGGAGCCATAACT
TATTGTTTCTTGGCCCGCCAGGGACCGGTAAAACCATGTTAGCGTCACGCTTGTGTGATTTATTACCCGAAATGAGCGAT
GAAGAGGCGATGGAAACGGCATCGGTTGCTTCGCTCACCGAGCAAGATATTAACCAGCATAATTGGAAGTTGCGCCCTTT
TCGTTCGCCTCATCACTCGAGTTCGATGGCTGCACTGGTGGGTGGGGGGACGATTCCAAGGCCGGGAGAAATCTCTCTGG
CACACAATGGTTTGCTTTTTTTAGATGAAATGCCAGAGTTTGAGCGTAAAGTGCTCGATTCGCTTCGAGAGCCTCTTGAA
TCGGGAGAGATTATTATTTCTCGGGCACAGGGTAAAACGCGTTTTCCGGCTCGCTTTCAATTGGTGGGGGCGCTTAATCC
GAGCCCGACAGGCTACTATGAAGGTAATCAGGCTCGGGTGAATCCTCAGGTTATTTTGCGTTATTTAAGCCGATTATCAG
GTCCACTATTGGATAGATTTGATATGTCGATAGAGATTCCAGCTTTGCCGAAAGGAACCTTATCTCAAGGGGGGGATCGA
GGTGAGAATACAGAGACAGTTCGTCAACGTGTGTTGGTGGCGAGAGAGCGAATGATAGCGAGAAGCGGTAAGGTCAATGC
TTTATTACAGAGTCGTGAAATAGAGACGTATTGCCGACTGCATAAAGCAGATGCGGAATTTTTAGAAAGTGCCTTACATC
GCTTAGGGTTATCAATACGAGCTTATCATCGCATCATTAAAGTGGCACGGACCATCGCAGATTTACAAGGAGAAGTGGAT
ATTCAGCGGACCCATTTGGCTGAAGCTTTAGGTTATCGTTCTATGGATAGGCTACTGAAACAATTATCTGCTCAGGCTGT
GTTCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4SAT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

88.166

99.803

0.88
  comM Vibrio campbellii strain DS40M4

83.037

99.803

0.829
  comM Haemophilus influenzae Rd KW20

66.469

99.803

0.663
  comM Glaesserella parasuis strain SC1401

64.51

100

0.648
  comM Legionella pneumophila str. Paris

50

97.638

0.488
  comM Legionella pneumophila strain ERS1305867

50

97.638

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

99.803

0.439

Multiple sequence alignment