Detailed information NTG0040826

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SSUD12_RS00340
• Genome accession: NC_017621
• Coordinates: 56215..57216 (+)
• Length: 333 a.a.
• NCBI ID: WP_014637277.1
• Uniprot ID: -
• Organism: Streptococcus suis D12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 51215..62216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUD12_RS00315 (SSUD12_0047)	-	51320..51898 (+)	579	WP_014637271.1	CPBP family intramembrane glutamic endopeptidase	-
SSUD12_RS00320 (SSUD12_0048)	-	51913..52320 (+)	408	WP_014637272.1	Msa family membrane protein	-
SSUD12_RS00325 (SSUD12_0049)	-	52334..53206 (+)	873	WP_014637273.1	ABC transporter ATP-binding protein	-
SSUD12_RS00330 (SSUD12_0050)	-	53212..53982 (+)	771	WP_014637274.1	hypothetical protein	-
SSUD12_RS00335 (SSUD12_0051)	-	53985..55697 (+)	1713	WP_014637275.1	ABC transporter ATP-binding protein	-
SSUD12_RS11655 (SSUD12_0052)	-	55798..55971 (+)	174	WP_014637276.1	hypothetical protein	-
SSUD12_RS00340 (SSUD12_0053)	ruvB	56215..57216 (+)	1002	WP_014637277.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SSUD12_RS00345 (SSUD12_0054)	-	57216..57962 (+)	747	Protein_51	GNAT family N-acetyltransferase	-
SSUD12_RS00350 (SSUD12_0056)	-	57964..58587 (+)	624	WP_014637278.1	HAD-IA family hydrolase	-
SSUD12_RS00355 (SSUD12_0057)	comR	58692..59591 (+)	900	WP_014637279.1	helix-turn-helix domain-containing protein	Regulator
SSUD12_RS00360 (SSUD12_0058)	-	59944..61146 (-)	1203	WP_014637280.1	IS110 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37587.09 Da
• Isoelectric Point: 4.5070

>NTDB_id=40826 SSUD12_RS00340 WP_014637277.1 56215..57216(+) (ruvB) [Streptococcus suis D12]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMHGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=40826 SSUD12_RS00340 WP_014637277.1 56215..57216(+) (ruvB) [Streptococcus suis D12]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCACAGAAATTAAA
TGAGTACATCGGTCAGGACAAGGTTAAGGACCAGCTCAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGCCCTCCAGGTTTGGGAAAGACCACCATGGCCTTTGTTATCGCCAACGAACTGGGTGTCAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAGAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCTATGGCGGTAGAGGAGATTCTTTACTCAGCCATGGAAGACTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCTAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCTCTGCGGGCCCGTTTTGGGATTACCGGTCACATGGAATACTACGAATTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGATATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCTAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GATGACAGCATTACGGACAAGGCTTTGACCATGCTGGACGTGGACCGTGAAGGTCTGGACTACGTGGACCAGAAGATTCT
CCGGACCATGATTGAGATGCACGGCGGTGGTCCTGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGATTCCTCATGCGGACGCGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae R6	89.728	99.399	0.892
ruvB	Streptococcus pneumoniae D39	89.728	99.399	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474