Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY28_RS24625 Genome accession   NZ_CP046814
Coordinates   3270646..3271185 (-) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3265646..3276185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS24605 - 3265965..3266297 (-) 333 WP_005381196.1 hypothetical protein -
  GPY28_RS24610 gspM 3266290..3266940 (-) 651 WP_158159801.1 type II secretion system protein GspM -
  GPY28_RS24615 - 3266937..3268382 (-) 1446 WP_158159802.1 MSHA biogenesis protein MshI -
  GPY28_RS24620 csrD 3268394..3270403 (-) 2010 WP_158159803.1 RNase E specificity factor CsrD -
  GPY28_RS24625 ssb 3270646..3271185 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  GPY28_RS24630 qstR 3271463..3272107 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY28_RS24635 galU 3272267..3273139 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY28_RS24640 uvrA 3273289..3276111 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=408246 GPY28_RS24625 WP_005387798.1 3270646..3271185(-) (ssb) [Vibrio alginolyticus strain 2010V-1102]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=408246 GPY28_RS24625 WP_005387798.1 3270646..3271185(-) (ssb) [Vibrio alginolyticus strain 2010V-1102]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464

Multiple sequence alignment