Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY28_RS24630 Genome accession   NZ_CP046814
Coordinates   3271463..3272107 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain 2010V-1102     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3266463..3277107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY28_RS24615 - 3266937..3268382 (-) 1446 WP_158159802.1 MSHA biogenesis protein MshI -
  GPY28_RS24620 csrD 3268394..3270403 (-) 2010 WP_158159803.1 RNase E specificity factor CsrD -
  GPY28_RS24625 ssb 3270646..3271185 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  GPY28_RS24630 qstR 3271463..3272107 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY28_RS24635 galU 3272267..3273139 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY28_RS24640 uvrA 3273289..3276111 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=408247 GPY28_RS24630 WP_005381237.1 3271463..3272107(+) (qstR) [Vibrio alginolyticus strain 2010V-1102]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408247 GPY28_RS24630 WP_005381237.1 3271463..3272107(+) (qstR) [Vibrio alginolyticus strain 2010V-1102]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGCATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519

Multiple sequence alignment