Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GP469_RS09475 Genome accession   NZ_CP046808
Coordinates   1898232..1898762 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 2013V-1146     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1893232..1903762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP469_RS09465 galU 1896179..1897051 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GP469_RS09470 qstR 1897309..1897953 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GP469_RS09475 ssb 1898232..1898762 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GP469_RS09480 csrD 1899003..1901012 (+) 2010 WP_005497274.1 RNase E specificity factor CsrD -
  GP469_RS09485 - 1901024..1902469 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  GP469_RS09490 gspM 1902466..1903116 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  GP469_RS09495 - 1903109..1903438 (+) 330 WP_020841335.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=408149 GP469_RS09475 WP_005466625.1 1898232..1898762(+) (ssb) [Vibrio parahaemolyticus strain 2013V-1146]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=408149 GP469_RS09475 WP_005466625.1 1898232..1898762(+) (ssb) [Vibrio parahaemolyticus strain 2013V-1146]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAACAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment