Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GP469_RS09470 Genome accession   NZ_CP046808
Coordinates   1897309..1897953 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain 2013V-1146     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1892309..1902953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP469_RS09460 uvrA 1893219..1896041 (-) 2823 WP_005497272.1 excinuclease ABC subunit UvrA -
  GP469_RS09465 galU 1896179..1897051 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GP469_RS09470 qstR 1897309..1897953 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GP469_RS09475 ssb 1898232..1898762 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GP469_RS09480 csrD 1899003..1901012 (+) 2010 WP_005497274.1 RNase E specificity factor CsrD -
  GP469_RS09485 - 1901024..1902469 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=408148 GP469_RS09470 WP_005480993.1 1897309..1897953(-) (qstR) [Vibrio parahaemolyticus strain 2013V-1146]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408148 GP469_RS09470 WP_005480993.1 1897309..1897953(-) (qstR) [Vibrio parahaemolyticus strain 2013V-1146]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment