Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY47_RS16840 Genome accession   NZ_CP046806
Coordinates   1848187..1848726 (-) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio alginolyticus strain 2439-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1843187..1853726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS16820 - 1843506..1843838 (-) 333 WP_005381196.1 hypothetical protein -
  GPY47_RS16825 gspM 1843831..1844481 (-) 651 WP_053350600.1 type II secretion system protein GspM -
  GPY47_RS16830 - 1844478..1845923 (-) 1446 WP_005387799.1 hypothetical protein -
  GPY47_RS16835 csrD 1845935..1847944 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  GPY47_RS16840 ssb 1848187..1848726 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  GPY47_RS16845 qstR 1849004..1849648 (+) 645 WP_158156939.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY47_RS16850 galU 1849808..1850680 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY47_RS16855 uvrA 1850830..1853652 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=408102 GPY47_RS16840 WP_005381235.1 1848187..1848726(-) (ssb) [Vibrio alginolyticus strain 2439-01]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=408102 GPY47_RS16840 WP_005381235.1 1848187..1848726(-) (ssb) [Vibrio alginolyticus strain 2439-01]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTCTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458

Multiple sequence alignment