Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY47_RS16845 Genome accession   NZ_CP046806
Coordinates   1849004..1849648 (+) Length   214 a.a.
NCBI ID   WP_158156939.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2439-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844004..1854648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS16830 - 1844478..1845923 (-) 1446 WP_005387799.1 hypothetical protein -
  GPY47_RS16835 csrD 1845935..1847944 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  GPY47_RS16840 ssb 1848187..1848726 (-) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  GPY47_RS16845 qstR 1849004..1849648 (+) 645 WP_158156939.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY47_RS16850 galU 1849808..1850680 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY47_RS16855 uvrA 1850830..1853652 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24499.47 Da        Isoelectric Point: 9.7165

>NTDB_id=408103 GPY47_RS16845 WP_158156939.1 1849004..1849648(+) (qstR) [Vibrio alginolyticus strain 2439-01]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDMLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408103 GPY47_RS16845 WP_158156939.1 1849004..1849648(+) (qstR) [Vibrio alginolyticus strain 2439-01]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCAACCGAAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATAGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATATGTTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAAGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.327

100

0.953
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment