Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY18_RS16430 Genome accession   NZ_CP046800
Coordinates   2023957..2024589 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio fluvialis strain 2012V-1235     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2018957..2029589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS16410 - 2019036..2020247 (+) 1212 WP_158147082.1 aspartate aminotransferase family protein -
  GPY18_RS16415 astA 2020347..2021366 (+) 1020 WP_020329458.1 arginine N-succinyltransferase -
  GPY18_RS16420 astD 2021400..2022857 (+) 1458 WP_158147083.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY18_RS16425 - 2023043..2023837 (+) 795 WP_020429272.1 DUF1338 domain-containing protein -
  GPY18_RS16430 crp 2023957..2024589 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY18_RS16435 - 2024831..2025700 (-) 870 WP_004728583.1 phosphoribulokinase -
  GPY18_RS16440 - 2025795..2026004 (-) 210 WP_020329461.1 YheU family protein -
  GPY18_RS16445 - 2026096..2027073 (-) 978 WP_020329462.1 hydrolase -
  GPY18_RS16450 - 2027186..2027659 (-) 474 WP_020429267.1 TIGR02444 family protein -
  GPY18_RS16455 - 2027656..2029578 (-) 1923 WP_020329464.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=408023 GPY18_RS16430 WP_004728582.1 2023957..2024589(-) (crp) [Vibrio fluvialis strain 2012V-1235]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408023 GPY18_RS16430 WP_004728582.1 2023957..2024589(-) (crp) [Vibrio fluvialis strain 2012V-1235]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTAATGCGCCTGTCTGGCCAGATGGCTCGCCGTCTGCAAGTGACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGCATCGCGCAGACCCTACTGAACCTGGCGAAACAACCAGACGCCATGACCCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGTTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAGACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment