Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY18_RS14825 Genome accession   NZ_CP046800
Coordinates   1682958..1684481 (-) Length   507 a.a.
NCBI ID   WP_158147002.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1677958..1689481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS14800 - 1678307..1678573 (+) 267 WP_020332578.1 DUF1040 family protein -
  GPY18_RS14805 ccoG 1678835..1680259 (+) 1425 WP_158146999.1 cytochrome c oxidase accessory protein CcoG -
  GPY18_RS14810 - 1680304..1681290 (+) 987 WP_158142489.1 serine/threonine protein kinase -
  GPY18_RS14815 - 1681321..1681920 (+) 600 WP_158147000.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY18_RS14820 - 1681961..1682854 (-) 894 WP_158147001.1 acyltransferase -
  GPY18_RS14825 comM 1682958..1684481 (-) 1524 WP_158147002.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY18_RS14830 ilvG 1684965..1686611 (+) 1647 WP_020332584.1 acetolactate synthase 2 catalytic subunit -
  GPY18_RS14835 ilvM 1686623..1686907 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  GPY18_RS14840 ilvE 1686919..1687860 (+) 942 WP_020332585.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55056.00 Da        Isoelectric Point: 8.2092

>NTDB_id=408012 GPY18_RS14825 WP_158147002.1 1682958..1684481(-) (comM) [Vibrio fluvialis strain 2012V-1235]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDGHDAAVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMNE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=408012 GPY18_RS14825 WP_158147002.1 1682958..1684481(-) (comM) [Vibrio fluvialis strain 2012V-1235]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGTATTCTGGCTGCTTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGTTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGGGCACGACGCCGCCGTGCCGCG
CGAACGCGATTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCGGCGGCGGGCAACCACAACC
TGTTGTTTCTTGGCCCGCCGGGCACGGGTAAAACTATGTTGGCCTCGCGCCTGTGCGATCTGCTGCCGGAGATGAATGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCAGCGCTGGTGGGCGGCGGCACCATTCCTCGTCCCGGAGAAATCTCACTTG
CTCACAATGGCCTGTTGTTTCTGGATGAAATGCCGGAATTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGCGCGCAGGGCAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAAGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCGTTGCCCAAAGGCACTTTGTCGCACGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGCAGTGGCAAAGTGAATGC
GCTGTTGCAAAGCCGTGAAATAGAAACTTATTGCCCGCTCAGTCAGCCGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GCCTAGGGTTGTCAATCCGGGCCTATCACCGCATTATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGGGCACACCTGGCCGAAGCGCTCGGCTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424

Multiple sequence alignment