Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY18_RS13460 Genome accession   NZ_CP046800
Coordinates   1398455..1398985 (-) Length   176 a.a.
NCBI ID   WP_020332215.1    Uniprot ID   S7JBV3
Organism   Vibrio fluvialis strain 2012V-1235     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1393455..1403985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS13440 - 1393918..1394196 (-) 279 WP_199251683.1 MSHA biogenesis protein MshK -
  GPY18_RS13445 - 1394222..1394872 (-) 651 WP_055453458.1 hypothetical protein -
  GPY18_RS13450 - 1394869..1396317 (-) 1449 WP_158146909.1 MSHA biogenesis protein MshI -
  GPY18_RS13455 csrD 1396325..1398319 (-) 1995 WP_158146910.1 RNase E specificity factor CsrD -
  GPY18_RS13460 ssb 1398455..1398985 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  GPY18_RS13465 qstR 1399268..1399918 (+) 651 WP_055452202.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY18_RS13470 galU 1400046..1400915 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY18_RS13475 uvrA 1401053..1403875 (+) 2823 WP_158146911.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19526.69 Da        Isoelectric Point: 5.7626

>NTDB_id=408008 GPY18_RS13460 WP_020332215.1 1398455..1398985(-) (ssb) [Vibrio fluvialis strain 2012V-1235]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=408008 GPY18_RS13460 WP_020332215.1 1398455..1398985(-) (ssb) [Vibrio fluvialis strain 2012V-1235]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTACATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.385

100

0.909
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.489

Multiple sequence alignment