Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY18_RS13465 Genome accession   NZ_CP046800
Coordinates   1399268..1399918 (+) Length   216 a.a.
NCBI ID   WP_055452202.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1394268..1404918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS13450 - 1394869..1396317 (-) 1449 WP_158146909.1 MSHA biogenesis protein MshI -
  GPY18_RS13455 csrD 1396325..1398319 (-) 1995 WP_158146910.1 RNase E specificity factor CsrD -
  GPY18_RS13460 ssb 1398455..1398985 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  GPY18_RS13465 qstR 1399268..1399918 (+) 651 WP_055452202.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY18_RS13470 galU 1400046..1400915 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY18_RS13475 uvrA 1401053..1403875 (+) 2823 WP_158146911.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24867.61 Da        Isoelectric Point: 9.2330

>NTDB_id=408009 GPY18_RS13465 WP_055452202.1 1399268..1399918(+) (qstR) [Vibrio fluvialis strain 2012V-1235]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATTELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=408009 GPY18_RS13465 WP_055452202.1 1399268..1399918(+) (qstR) [Vibrio fluvialis strain 2012V-1235]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTTGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTACCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCACCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment