Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MAR181_RS02655 Genome accession   NC_015559
Coordinates   585939..587456 (+) Length   505 a.a.
NCBI ID   WP_013795075.1    Uniprot ID   F6CZT7
Organism   Marinomonas posidonica IVIA-Po-181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 580939..592456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAR181_RS02630 (Mar181_0533) - 581262..582791 (-) 1530 WP_013795070.1 carbon-nitrogen hydrolase family protein -
  MAR181_RS02635 (Mar181_0534) - 583231..584493 (-) 1263 WP_013795071.1 ammonium transporter -
  MAR181_RS02640 (Mar181_0535) glnK 584531..584869 (-) 339 WP_013795072.1 P-II family nitrogen regulator -
  MAR181_RS02645 (Mar181_0536) - 585347..585586 (+) 240 WP_013795073.1 accessory factor UbiK family protein -
  MAR181_RS02650 (Mar181_0537) - 585589..585810 (-) 222 WP_013795074.1 TIGR02450 family Trp-rich protein -
  MAR181_RS02655 (Mar181_0538) comM 585939..587456 (+) 1518 WP_013795075.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MAR181_RS02660 (Mar181_0539) - 587529..588299 (+) 771 WP_013795076.1 hypothetical protein -
  MAR181_RS02665 (Mar181_0540) - 588738..589652 (+) 915 WP_013795077.1 bile acid:sodium symporter family protein -
  MAR181_RS02670 (Mar181_0541) - 589706..590899 (-) 1194 WP_013795078.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54842.67 Da        Isoelectric Point: 7.3950

>NTDB_id=40793 MAR181_RS02655 WP_013795075.1 585939..587456(+) (comM) [Marinomonas posidonica IVIA-Po-181]
MSLATIYSRARVGVASPLVTVETHISNGLPSLNIVGLPEAAVREAKDRVRSAIINSHFEFPTRRVTINLAPADLPKEGGR
YDLAIAISVLVASGQLGELNLGNMEFIGELALSGDIRGVSGLLPSAIACYQSNRQLILPADNQAEAALVEGHSIFAKHLT
QVTAHLLKQSALPLCQGRPEMDLPSQQAFNDMRDVKGQYQARRALEVAAAGGHNLLFIGPAGTGKTMLASRLPSIMPQMT
EAEALSVASVQSVAGRKMGQDWHWSERPFRSPHHSCSAAALVGGGSIPKPGEASLAHCGVLFLDELPEFDRKVLEVLREP
LENGEVHISRARGQVTFPARFQLVAAMNASNEAYHGEQEYYQSKASQKYLKKLSAPFLDRIDLHVEVPPLPSDVLVNVRE
EGESSDSIRVRVEQAVARQRARQGVQNALLSGRQLEAICALSDDDKHFMQQALDTLKLSARAYHRVLKVALTLADLNDSA
VTRAHLMESLSYRKMEKTLASVLSS

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=40793 MAR181_RS02655 WP_013795075.1 585939..587456(+) (comM) [Marinomonas posidonica IVIA-Po-181]
ATGAGTTTAGCGACTATCTACAGTCGCGCCCGTGTTGGCGTGGCATCCCCTCTTGTTACTGTTGAAACTCACATTTCCAA
TGGTCTGCCTTCTCTTAATATTGTCGGCTTACCCGAAGCAGCTGTTCGAGAAGCCAAAGATAGAGTACGCAGTGCCATTA
TCAACAGTCATTTTGAATTTCCCACCCGTAGAGTAACCATTAACCTCGCCCCAGCCGATTTACCCAAAGAAGGTGGACGT
TACGATTTAGCCATTGCCATCAGTGTATTGGTGGCATCCGGACAGCTTGGAGAGTTAAATTTAGGTAATATGGAATTTAT
TGGCGAGTTGGCTTTATCGGGAGATATTCGAGGTGTTTCTGGTTTATTACCGTCAGCGATTGCTTGTTATCAATCGAATC
GGCAATTGATTCTTCCGGCAGACAATCAAGCTGAAGCCGCACTAGTAGAAGGTCACTCCATTTTTGCCAAGCATTTAACG
CAAGTGACAGCGCATTTACTTAAACAAAGTGCACTACCTCTTTGTCAGGGGCGTCCTGAAATGGATCTTCCTTCACAACA
AGCCTTTAATGACATGCGTGATGTGAAAGGGCAATATCAAGCAAGACGAGCGTTAGAAGTGGCGGCTGCTGGTGGTCATA
ATTTGTTGTTTATTGGTCCAGCAGGCACAGGTAAAACCATGTTGGCATCTCGGCTTCCCAGTATTATGCCGCAGATGACC
GAAGCCGAAGCCTTGTCTGTGGCGTCTGTGCAATCCGTTGCAGGTCGTAAAATGGGGCAAGATTGGCATTGGTCAGAGCG
ACCTTTTCGTTCGCCTCACCATTCTTGCTCGGCTGCCGCCTTAGTCGGTGGTGGCTCAATACCAAAACCCGGTGAAGCGT
CGCTAGCGCATTGTGGCGTGTTATTTTTAGATGAATTACCCGAGTTCGACCGCAAGGTGTTGGAAGTACTGAGAGAGCCT
CTGGAAAATGGCGAAGTGCACATTTCACGAGCCCGTGGGCAGGTGACTTTTCCTGCCAGATTTCAATTAGTTGCCGCGAT
GAATGCCAGTAATGAAGCGTATCATGGGGAGCAAGAGTATTATCAATCTAAGGCCAGTCAAAAATATTTAAAAAAACTCT
CAGCCCCTTTTTTGGACCGCATTGATTTGCATGTGGAAGTACCGCCATTACCGTCTGATGTGTTGGTGAATGTGCGGGAA
GAGGGAGAGTCCAGTGACAGCATTCGTGTACGAGTGGAGCAAGCGGTGGCGAGACAAAGAGCTCGACAAGGTGTTCAAAA
TGCCTTGTTAAGTGGTCGTCAACTAGAAGCGATTTGCGCCTTGAGTGATGATGATAAACATTTTATGCAGCAAGCCTTGG
ATACGCTGAAACTATCAGCACGAGCTTATCATCGAGTGTTAAAAGTCGCCTTAACCTTGGCGGATTTGAATGACTCTGCT
GTGACCAGAGCGCATTTAATGGAATCTCTTAGTTATCGTAAGATGGAGAAGACATTGGCATCCGTTTTGTCGAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6CZT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.672

99.604

0.545
  comM Vibrio campbellii strain DS40M4

53.28

99.604

0.531
  comM Haemophilus influenzae Rd KW20

51.373

100

0.519
  comM Glaesserella parasuis strain SC1401

51.272

100

0.519
  comM Legionella pneumophila str. Paris

47

99.01

0.465
  comM Legionella pneumophila strain ERS1305867

47

99.01

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.86

100

0.428

Multiple sequence alignment