Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GPY38_RS11980 | Genome accession | NZ_CP046795 |
| Coordinates | 2583418..2583951 (-) | Length | 177 a.a. |
| NCBI ID | WP_014205867.1 | Uniprot ID | A0A0Q2XSJ5 |
| Organism | Vibrio furnissii strain 2420-04 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2578418..2588951
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY38_RS11960 | - | 2578881..2579192 (-) | 312 | WP_004724074.1 | hypothetical protein | - |
| GPY38_RS11965 | gspM | 2579185..2579835 (-) | 651 | WP_158141185.1 | type II secretion system protein GspM | - |
| GPY38_RS11970 | - | 2579835..2581280 (-) | 1446 | WP_014205865.1 | MSHA biogenesis protein MshI | - |
| GPY38_RS11975 | csrD | 2581288..2583282 (-) | 1995 | WP_049781822.1 | RNase E specificity factor CsrD | - |
| GPY38_RS11980 | ssb | 2583418..2583951 (-) | 534 | WP_014205867.1 | single-stranded DNA-binding protein | Machinery gene |
| GPY38_RS11985 | qstR | 2584234..2584884 (+) | 651 | WP_014205868.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GPY38_RS11990 | galU | 2585013..2585882 (+) | 870 | WP_199244838.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GPY38_RS11995 | uvrA | 2586020..2588842 (+) | 2823 | WP_158141186.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19671.81 Da Isoelectric Point: 5.7626
>NTDB_id=407916 GPY38_RS11980 WP_014205867.1 2583418..2583951(-) (ssb) [Vibrio furnissii strain 2420-04]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=407916 GPY38_RS11980 WP_014205867.1 2583418..2583951(-) (ssb) [Vibrio furnissii strain 2420-04]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAGCAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAGCAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
90.503 |
100 |
0.915 |
| ssb | Glaesserella parasuis strain SC1401 |
54.098 |
100 |
0.559 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.48 |