Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY38_RS11985 Genome accession   NZ_CP046795
Coordinates   2584234..2584884 (+) Length   216 a.a.
NCBI ID   WP_014205868.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2579234..2589884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS11970 - 2579835..2581280 (-) 1446 WP_014205865.1 MSHA biogenesis protein MshI -
  GPY38_RS11975 csrD 2581288..2583282 (-) 1995 WP_049781822.1 RNase E specificity factor CsrD -
  GPY38_RS11980 ssb 2583418..2583951 (-) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  GPY38_RS11985 qstR 2584234..2584884 (+) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY38_RS11990 galU 2585013..2585882 (+) 870 WP_199244838.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY38_RS11995 uvrA 2586020..2588842 (+) 2823 WP_158141186.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24779.49 Da        Isoelectric Point: 8.7565

>NTDB_id=407917 GPY38_RS11985 WP_014205868.1 2584234..2584884(+) (qstR) [Vibrio furnissii strain 2420-04]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=407917 GPY38_RS11985 WP_014205868.1 2584234..2584884(+) (qstR) [Vibrio furnissii strain 2420-04]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTACGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGCGCCTCAAACATGCAAATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACTCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio parahaemolyticus RIMD 2210633

50.224

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514

Multiple sequence alignment