Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPX86_RS09500 | Genome accession | NZ_CP046793 |
| Coordinates | 2133804..2134394 (+) | Length | 196 a.a. |
| NCBI ID | WP_154169997.1 | Uniprot ID | - |
| Organism | Vibrio metschnikovii strain 9502-00 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2128804..2139394
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX86_RS09485 | - | 2129599..2132079 (-) | 2481 | WP_110167722.1 | PBP1A family penicillin-binding protein | - |
| GPX86_RS09490 | pilM | 2132221..2133228 (+) | 1008 | WP_158144633.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPX86_RS09495 | pilN | 2133218..2133811 (+) | 594 | WP_158144634.1 | PilN domain-containing protein | Machinery gene |
| GPX86_RS09500 | pilO | 2133804..2134394 (+) | 591 | WP_154169997.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPX86_RS09505 | pilP | 2134384..2134905 (+) | 522 | WP_040903953.1 | pilus assembly protein PilP | Machinery gene |
| GPX86_RS09510 | pilQ | 2134930..2136651 (+) | 1722 | WP_158144635.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPX86_RS09515 | aroK | 2136838..2137356 (+) | 519 | WP_040903956.1 | shikimate kinase AroK | - |
| GPX86_RS09520 | aroB | 2137385..2138470 (+) | 1086 | WP_004394485.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22373.53 Da Isoelectric Point: 4.5506
>NTDB_id=407879 GPX86_RS09500 WP_154169997.1 2133804..2134394(+) (pilO) [Vibrio metschnikovii strain 9502-00]
MANFRDLDIDELLEWPLNAQLTVIVLVMVVIQVIGYGMYLSPKQEALEGLNQQEQSLKSLVRIKANKVAALPQLQTQLDE
LAERYDFLLRQLPAQQELASLLASVNELGLEHGLTFTRIDWGEKQPQAFLYRLPLNIELTGSYHNIGDFSQAIATLPRII
NVDDVDWQRVSQESSTLHFRVRAYTYQFKAEAGDEK
MANFRDLDIDELLEWPLNAQLTVIVLVMVVIQVIGYGMYLSPKQEALEGLNQQEQSLKSLVRIKANKVAALPQLQTQLDE
LAERYDFLLRQLPAQQELASLLASVNELGLEHGLTFTRIDWGEKQPQAFLYRLPLNIELTGSYHNIGDFSQAIATLPRII
NVDDVDWQRVSQESSTLHFRVRAYTYQFKAEAGDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=407879 GPX86_RS09500 WP_154169997.1 2133804..2134394(+) (pilO) [Vibrio metschnikovii strain 9502-00]
ATGGCTAATTTTCGTGATTTAGATATCGATGAATTGCTTGAATGGCCGCTCAACGCACAACTGACGGTGATTGTGTTGGT
CATGGTAGTGATTCAAGTCATCGGCTATGGCATGTATTTATCACCTAAACAAGAGGCACTCGAAGGGCTCAATCAGCAAG
AGCAGAGTCTTAAATCATTAGTACGCATTAAGGCCAATAAAGTCGCGGCATTACCTCAGTTGCAAACTCAATTGGATGAG
TTAGCTGAGCGTTATGATTTTTTATTGCGCCAACTCCCAGCACAGCAAGAGCTGGCCAGTTTGCTTGCTTCCGTCAACGA
GCTGGGATTAGAACATGGATTAACCTTTACTCGAATTGATTGGGGAGAAAAGCAACCGCAGGCATTTTTGTATCGCTTAC
CATTGAATATTGAACTGACGGGAAGTTACCACAACATTGGCGATTTTTCTCAGGCGATAGCCACGCTACCAAGAATCATC
AATGTTGATGATGTGGATTGGCAAAGAGTCAGTCAAGAGAGCAGTACCTTACATTTCAGAGTACGGGCTTACACCTATCA
ATTTAAAGCGGAGGCAGGCGATGAGAAATAG
ATGGCTAATTTTCGTGATTTAGATATCGATGAATTGCTTGAATGGCCGCTCAACGCACAACTGACGGTGATTGTGTTGGT
CATGGTAGTGATTCAAGTCATCGGCTATGGCATGTATTTATCACCTAAACAAGAGGCACTCGAAGGGCTCAATCAGCAAG
AGCAGAGTCTTAAATCATTAGTACGCATTAAGGCCAATAAAGTCGCGGCATTACCTCAGTTGCAAACTCAATTGGATGAG
TTAGCTGAGCGTTATGATTTTTTATTGCGCCAACTCCCAGCACAGCAAGAGCTGGCCAGTTTGCTTGCTTCCGTCAACGA
GCTGGGATTAGAACATGGATTAACCTTTACTCGAATTGATTGGGGAGAAAAGCAACCGCAGGCATTTTTGTATCGCTTAC
CATTGAATATTGAACTGACGGGAAGTTACCACAACATTGGCGATTTTTCTCAGGCGATAGCCACGCTACCAAGAATCATC
AATGTTGATGATGTGGATTGGCAAAGAGTCAGTCAAGAGAGCAGTACCTTACATTTCAGAGTACGGGCTTACACCTATCA
ATTTAAAGCGGAGGCAGGCGATGAGAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
72.449 |
100 |
0.724 |
| pilO | Vibrio campbellii strain DS40M4 |
67.725 |
96.429 |
0.653 |