Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | GPX86_RS09495 | Genome accession | NZ_CP046793 |
| Coordinates | 2133218..2133811 (+) | Length | 197 a.a. |
| NCBI ID | WP_158144634.1 | Uniprot ID | - |
| Organism | Vibrio metschnikovii strain 9502-00 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2128218..2138811
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX86_RS09480 | oxyR | 2128646..2129545 (+) | 900 | WP_004394478.1 | DNA-binding transcriptional regulator OxyR | - |
| GPX86_RS09485 | - | 2129599..2132079 (-) | 2481 | WP_110167722.1 | PBP1A family penicillin-binding protein | - |
| GPX86_RS09490 | pilM | 2132221..2133228 (+) | 1008 | WP_158144633.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPX86_RS09495 | pilN | 2133218..2133811 (+) | 594 | WP_158144634.1 | PilN domain-containing protein | Machinery gene |
| GPX86_RS09500 | pilO | 2133804..2134394 (+) | 591 | WP_154169997.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPX86_RS09505 | pilP | 2134384..2134905 (+) | 522 | WP_040903953.1 | pilus assembly protein PilP | Machinery gene |
| GPX86_RS09510 | pilQ | 2134930..2136651 (+) | 1722 | WP_158144635.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPX86_RS09515 | aroK | 2136838..2137356 (+) | 519 | WP_040903956.1 | shikimate kinase AroK | - |
| GPX86_RS09520 | aroB | 2137385..2138470 (+) | 1086 | WP_004394485.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 22574.90 Da Isoelectric Point: 9.8478
>NTDB_id=407878 GPX86_RS09495 WP_158144634.1 2133218..2133811(+) (pilN) [Vibrio metschnikovii strain 9502-00]
MLHSINLFPWREAQRADHKRRFLQLMSLGVLVALLMQWGAGHYLDQQQQYQQARLDFLNQHLQQLDQRLRALKMTEAEHQ
ALQARLSVVESLQQKRNKTTQLMNLMPELIPEGVYVDKISMKGDAVEVSGISDSTARLATMLDKLERSPHLSAVGMHSIV
AGNQRFNKDFQSFKVSFHFHTAQPGLEALIRQGEHHG
MLHSINLFPWREAQRADHKRRFLQLMSLGVLVALLMQWGAGHYLDQQQQYQQARLDFLNQHLQQLDQRLRALKMTEAEHQ
ALQARLSVVESLQQKRNKTTQLMNLMPELIPEGVYVDKISMKGDAVEVSGISDSTARLATMLDKLERSPHLSAVGMHSIV
AGNQRFNKDFQSFKVSFHFHTAQPGLEALIRQGEHHG
Nucleotide
Download Length: 594 bp
>NTDB_id=407878 GPX86_RS09495 WP_158144634.1 2133218..2133811(+) (pilN) [Vibrio metschnikovii strain 9502-00]
ATGTTGCATAGTATCAATTTATTCCCTTGGCGAGAGGCGCAGCGTGCTGATCATAAACGGCGCTTTCTCCAGCTTATGAG
TCTTGGTGTCTTAGTCGCTTTGCTCATGCAATGGGGTGCCGGCCATTACCTTGATCAGCAACAACAGTACCAACAGGCAC
GATTAGATTTTTTGAATCAGCATCTTCAGCAACTAGATCAGCGATTACGGGCGCTCAAAATGACCGAAGCTGAGCATCAA
GCACTGCAAGCCCGGCTCAGTGTTGTTGAGTCCTTACAGCAAAAGCGCAATAAAACCACACAATTGATGAACTTGATGCC
AGAGTTGATTCCTGAAGGGGTTTACGTCGACAAAATTAGTATGAAGGGGGATGCGGTCGAAGTCAGCGGGATTAGCGATA
GTACCGCACGCTTAGCCACCATGTTAGATAAATTAGAAAGGTCACCACACTTATCAGCAGTAGGCATGCACTCGATTGTC
GCTGGGAATCAGCGTTTTAATAAAGATTTTCAGAGTTTTAAGGTCTCTTTTCATTTTCATACTGCTCAACCAGGATTAGA
GGCGTTGATTCGGCAAGGTGAACATCATGGCTAA
ATGTTGCATAGTATCAATTTATTCCCTTGGCGAGAGGCGCAGCGTGCTGATCATAAACGGCGCTTTCTCCAGCTTATGAG
TCTTGGTGTCTTAGTCGCTTTGCTCATGCAATGGGGTGCCGGCCATTACCTTGATCAGCAACAACAGTACCAACAGGCAC
GATTAGATTTTTTGAATCAGCATCTTCAGCAACTAGATCAGCGATTACGGGCGCTCAAAATGACCGAAGCTGAGCATCAA
GCACTGCAAGCCCGGCTCAGTGTTGTTGAGTCCTTACAGCAAAAGCGCAATAAAACCACACAATTGATGAACTTGATGCC
AGAGTTGATTCCTGAAGGGGTTTACGTCGACAAAATTAGTATGAAGGGGGATGCGGTCGAAGTCAGCGGGATTAGCGATA
GTACCGCACGCTTAGCCACCATGTTAGATAAATTAGAAAGGTCACCACACTTATCAGCAGTAGGCATGCACTCGATTGTC
GCTGGGAATCAGCGTTTTAATAAAGATTTTCAGAGTTTTAAGGTCTCTTTTCATTTTCATACTGCTCAACCAGGATTAGA
GGCGTTGATTCGGCAAGGTGAACATCATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
60.406 |
100 |
0.604 |
| pilN | Vibrio campbellii strain DS40M4 |
55.838 |
100 |
0.558 |