Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPX86_RS09505 Genome accession   NZ_CP046793
Coordinates   2134384..2134905 (+) Length   173 a.a.
NCBI ID   WP_040903953.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129384..2139905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS09485 - 2129599..2132079 (-) 2481 WP_110167722.1 PBP1A family penicillin-binding protein -
  GPX86_RS09490 pilM 2132221..2133228 (+) 1008 WP_158144633.1 type IV pilus assembly protein PilM Machinery gene
  GPX86_RS09495 pilN 2133218..2133811 (+) 594 WP_158144634.1 PilN domain-containing protein Machinery gene
  GPX86_RS09500 pilO 2133804..2134394 (+) 591 WP_154169997.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPX86_RS09505 pilP 2134384..2134905 (+) 522 WP_040903953.1 pilus assembly protein PilP Machinery gene
  GPX86_RS09510 pilQ 2134930..2136651 (+) 1722 WP_158144635.1 type IV pilus secretin PilQ family protein Machinery gene
  GPX86_RS09515 aroK 2136838..2137356 (+) 519 WP_040903956.1 shikimate kinase AroK -
  GPX86_RS09520 aroB 2137385..2138470 (+) 1086 WP_004394485.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19407.22 Da        Isoelectric Point: 7.8013

>NTDB_id=407880 GPX86_RS09505 WP_040903953.1 2134384..2134905(+) (pilP) [Vibrio metschnikovii strain 9502-00]
MRNSTSIVTALVTFVSLIGCKANQESLVDYLAEVEAKSQQEVAQLTPVIAFQAFEYAQHDAREPFVLPREAIAQNQPITN
RHCWQPKSRGKTTSLERYPLNQLQLRGVMRREREVSALIQTPDGMVVTLQAGQYVGVNNGQVIRVAEDHLLIKETLPDGL
GCWNQRHVTLALK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=407880 GPX86_RS09505 WP_040903953.1 2134384..2134905(+) (pilP) [Vibrio metschnikovii strain 9502-00]
ATGAGAAATAGTACGTCAATCGTGACTGCGCTAGTCACTTTTGTGTCTTTGATCGGCTGTAAAGCCAATCAAGAGTCTCT
GGTGGACTACTTAGCGGAAGTGGAAGCTAAGAGTCAACAAGAGGTTGCTCAGCTAACGCCAGTGATTGCGTTTCAAGCTT
TTGAATATGCACAGCATGACGCACGCGAGCCTTTTGTTTTACCACGAGAAGCGATTGCCCAAAATCAACCGATCACCAAT
CGCCATTGCTGGCAGCCTAAATCGAGAGGAAAAACCACTTCACTGGAGCGATATCCGCTAAATCAATTGCAATTGCGTGG
TGTGATGCGCCGTGAAAGAGAGGTTTCTGCTTTGATTCAAACACCTGATGGAATGGTGGTTACTCTCCAAGCGGGTCAGT
ACGTCGGAGTAAATAATGGGCAAGTTATACGTGTGGCCGAGGATCATCTATTGATTAAAGAAACCTTACCAGATGGATTG
GGGTGCTGGAATCAGCGTCACGTCACATTGGCTTTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

58.282

94.22

0.549
  pilP Vibrio campbellii strain DS40M4

47.399

100

0.474

Multiple sequence alignment