Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY30_RS14675 Genome accession   NZ_CP046791
Coordinates   2987900..2988442 (-) Length   180 a.a.
NCBI ID   WP_039435746.1    Uniprot ID   A0AAI9G9M3
Organism   Vibrio navarrensis strain 2462-79     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2982900..2993442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS14655 - 2983342..2983665 (-) 324 WP_252973504.1 MSHA biogenesis protein MshK -
  GPY30_RS14660 pilO 2983658..2984308 (-) 651 WP_158134567.1 type 4a pilus biogenesis protein PilO -
  GPY30_RS23575 - 2984308..2985745 (-) 1438 Protein_2685 MSHA biogenesis protein MshI -
  GPY30_RS14670 csrD 2985758..2987749 (-) 1992 WP_039430608.1 RNase E specificity factor CsrD -
  GPY30_RS14675 ssb 2987900..2988442 (-) 543 WP_039435746.1 single-stranded DNA-binding protein Machinery gene
  GPY30_RS14680 - 2988423..2988677 (-) 255 WP_158134569.1 hypothetical protein -
  GPY30_RS14685 qstR 2988738..2989385 (+) 648 WP_158134571.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY30_RS14690 galU 2989569..2990441 (+) 873 WP_039430633.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY30_RS14695 uvrA 2990584..2993406 (+) 2823 WP_039435748.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19782.86 Da        Isoelectric Point: 5.6659

>NTDB_id=407841 GPY30_RS14675 WP_039435746.1 2987900..2988442(-) (ssb) [Vibrio navarrensis strain 2462-79]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYSGVMQMLGGRPQGGAPAMGGAPQAQQQGGWGQPQQPAAHQQQSYQAPAQQHAP
QQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=407841 GPY30_RS14675 WP_039435746.1 2987900..2988442(-) (ssb) [Vibrio navarrensis strain 2462-79]
ATGGCCAGCCGTGGAATTAATAAAGTAATCTTGGTAGGGAACCTAGGGAACGACCCTGAAATTCGTTATATGCCAAGCGG
CGGTGCAGTGGCTAACATTACCGTTGCTACTTCGGAAACTTGGCGCGACAAAGCGACTGGCGAACCGCGTGAAAAAACGG
AATGGCATCGTGTTACCCTGTATGGAAAACTCGCTGAAGTCGCAGGTGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGCCAATTGCAGACGCGCAAGTGGCAAGATCAAAATGGTCAAGATCGCTACTCAACAGACATCGTGGTACAAGGCTA
CAGCGGTGTGATGCAGATGCTGGGTGGACGTCCACAAGGCGGCGCGCCAGCGATGGGTGGTGCACCTCAAGCGCAGCAAC
AGGGGGGCTGGGGACAGCCACAACAGCCAGCCGCGCATCAGCAGCAGTCATATCAAGCGCCTGCACAGCAGCATGCCCCG
CAGCAATCTCAGCCGCAGTATAATGAACCACCAATGGATTTCGATGACGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.868

100

0.828
  ssb Glaesserella parasuis strain SC1401

53.723

100

0.561
  ssb Neisseria meningitidis MC58

49.18

100

0.5
  ssb Neisseria gonorrhoeae MS11

49.18

100

0.5

Multiple sequence alignment