Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY30_RS14685 Genome accession   NZ_CP046791
Coordinates   2988738..2989385 (+) Length   215 a.a.
NCBI ID   WP_158134571.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2462-79     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983738..2994385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS23575 - 2984308..2985745 (-) 1438 Protein_2685 MSHA biogenesis protein MshI -
  GPY30_RS14670 csrD 2985758..2987749 (-) 1992 WP_039430608.1 RNase E specificity factor CsrD -
  GPY30_RS14675 ssb 2987900..2988442 (-) 543 WP_039435746.1 single-stranded DNA-binding protein Machinery gene
  GPY30_RS14680 - 2988423..2988677 (-) 255 WP_158134569.1 hypothetical protein -
  GPY30_RS14685 qstR 2988738..2989385 (+) 648 WP_158134571.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY30_RS14690 galU 2989569..2990441 (+) 873 WP_039430633.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY30_RS14695 uvrA 2990584..2993406 (+) 2823 WP_039435748.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24697.69 Da        Isoelectric Point: 9.3465

>NTDB_id=407842 GPY30_RS14685 WP_158134571.1 2988738..2989385(+) (qstR) [Vibrio navarrensis strain 2462-79]
MRKSSYARSLFFLQRANAQPPVFIDTLARAIDLPIPAITTDTLMRTDPLHRNRILLIDYQEHKVLLLQIRNLPLICKNFE
TIIFNVPKRLSTDELLSLGQSKAVFYSDCSMEKIAEGVIAVIEGQNWLPRHVQAQLLHYYRNMFNTHTAPANVDLTIREI
QVLRCLQAGASNAHIAEDLFISEYTVKSHLYQIFKKLSVKNRLQATAWADQHLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=407842 GPY30_RS14685 WP_158134571.1 2988738..2989385(+) (qstR) [Vibrio navarrensis strain 2462-79]
ATGAGAAAATCCTCCTATGCCAGAAGCTTGTTCTTTCTCCAGCGAGCAAACGCACAACCCCCAGTATTTATTGATACCTT
AGCGCGCGCCATCGATCTCCCCATACCAGCGATTACCACAGACACCTTGATGCGAACCGATCCCTTGCACCGTAACCGCA
TCTTGTTGATCGACTATCAAGAACACAAAGTATTGCTGTTACAAATTAGAAACCTGCCACTGATTTGCAAAAACTTTGAA
ACCATCATTTTCAACGTACCAAAACGATTGAGCACCGATGAGCTGCTCAGCCTTGGACAGAGCAAAGCGGTTTTCTACTC
AGATTGCAGCATGGAAAAAATTGCCGAAGGCGTTATTGCCGTGATTGAAGGGCAAAACTGGCTACCTCGCCACGTTCAGG
CGCAGCTTCTGCATTACTACCGCAATATGTTCAACACCCATACCGCACCCGCCAATGTGGACCTGACCATTCGCGAAATT
CAAGTGCTACGCTGCTTACAAGCAGGAGCAAGCAATGCTCACATCGCCGAAGATCTGTTTATCAGCGAATACACGGTCAA
ATCGCATCTCTACCAGATTTTTAAAAAGCTCTCGGTAAAAAACCGTCTTCAGGCCACCGCCTGGGCCGATCAACATCTAC
TCTCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

64.516

100

0.651
  qstR Vibrio campbellii strain DS40M4

64.352

100

0.647
  qstR Vibrio cholerae strain A1552

51.152

100

0.516

Multiple sequence alignment