Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY39_RS12260 Genome accession   NZ_CP046783
Coordinates   2413286..2413816 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2408286..2418816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS12240 - 2408610..2408939 (-) 330 WP_005481006.1 MSHA biogenesis protein MshK -
  GPY39_RS12245 gspM 2408932..2409582 (-) 651 WP_005497276.1 type II secretion system protein GspM -
  GPY39_RS12250 - 2409579..2411024 (-) 1446 WP_021450081.1 MSHA biogenesis protein MshI -
  GPY39_RS12255 csrD 2411036..2413045 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  GPY39_RS12260 ssb 2413286..2413816 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY39_RS12265 qstR 2414095..2414739 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY39_RS12270 galU 2414998..2415870 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=407695 GPY39_RS12260 WP_005466625.1 2413286..2413816(-) (ssb) [Vibrio parahaemolyticus strain 2013V-1181]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=407695 GPY39_RS12260 WP_005466625.1 2413286..2413816(-) (ssb) [Vibrio parahaemolyticus strain 2013V-1181]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment