Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY39_RS12265 Genome accession   NZ_CP046783
Coordinates   2414095..2414739 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2409095..2419739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS12250 - 2409579..2411024 (-) 1446 WP_021450081.1 MSHA biogenesis protein MshI -
  GPY39_RS12255 csrD 2411036..2413045 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  GPY39_RS12260 ssb 2413286..2413816 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY39_RS12265 qstR 2414095..2414739 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY39_RS12270 galU 2414998..2415870 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY39_RS12275 uvrA 2416008..2418830 (+) 2823 WP_005490537.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=407696 GPY39_RS12265 WP_005480993.1 2414095..2414739(+) (qstR) [Vibrio parahaemolyticus strain 2013V-1181]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407696 GPY39_RS12265 WP_005480993.1 2414095..2414739(+) (qstR) [Vibrio parahaemolyticus strain 2013V-1181]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAAAAAGTCGCATCGTTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTCGGCGAAGGACTGAAAGGTATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment