Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY17_RS23090 Genome accession   NZ_CP046782
Coordinates   2956252..2956782 (-) Length   176 a.a.
NCBI ID   WP_042772703.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2951252..2961782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS23070 - 2951576..2951905 (-) 330 WP_005481006.1 MSHA biogenesis protein MshK -
  GPY17_RS23075 gspM 2951898..2952548 (-) 651 WP_005497276.1 type II secretion system protein GspM -
  GPY17_RS23080 - 2952545..2953990 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  GPY17_RS23085 csrD 2954002..2956011 (-) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  GPY17_RS23090 ssb 2956252..2956782 (-) 531 WP_042772703.1 single-stranded DNA-binding protein Machinery gene
  GPY17_RS23095 qstR 2957061..2957705 (+) 645 WP_025498808.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY17_RS23100 galU 2957963..2958835 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19593.64 Da        Isoelectric Point: 4.9371

>NTDB_id=407663 GPY17_RS23090 WP_042772703.1 2956252..2956782(-) (ssb) [Vibrio parahaemolyticus strain 2013V-1244]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKASGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQERYSTEVVVQGFNGVMQMLGGRAQGSAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=407663 GPY17_RS23090 WP_042772703.1 2956252..2956782(-) (ssb) [Vibrio parahaemolyticus strain 2013V-1244]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGTCTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGAACGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTAGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCCCCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.33

100

0.807
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.597
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment