Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY17_RS23095 Genome accession   NZ_CP046782
Coordinates   2957061..2957705 (+) Length   214 a.a.
NCBI ID   WP_025498808.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1244     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952061..2962705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY17_RS23080 - 2952545..2953990 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  GPY17_RS23085 csrD 2954002..2956011 (-) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  GPY17_RS23090 ssb 2956252..2956782 (-) 531 WP_042772703.1 single-stranded DNA-binding protein Machinery gene
  GPY17_RS23095 qstR 2957061..2957705 (+) 645 WP_025498808.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY17_RS23100 galU 2957963..2958835 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY17_RS23105 uvrA 2958973..2961795 (+) 2823 WP_042772712.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24368.17 Da        Isoelectric Point: 8.7760

>NTDB_id=407664 GPY17_RS23095 WP_025498808.1 2957061..2957705(+) (qstR) [Vibrio parahaemolyticus strain 2013V-1244]
MRKSAYARKLFLISIEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407664 GPY17_RS23095 WP_025498808.1 2957061..2957705(+) (qstR) [Vibrio parahaemolyticus strain 2013V-1244]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATCGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGTGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment