Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PSEFU_RS03380 | Genome accession | NC_015556 |
| Coordinates | 739169..739663 (+) | Length | 164 a.a. |
| NCBI ID | WP_013789781.1 | Uniprot ID | A0A561DI65 |
| Organism | Pseudomonas fulva 12-X | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 734169..744663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSEFU_RS03365 (Psefu_0668) | bfr | 734279..734743 (+) | 465 | WP_013789778.1 | bacterioferritin | - |
| PSEFU_RS03370 (Psefu_0669) | uvrA | 734798..737632 (-) | 2835 | WP_013789779.1 | excinuclease ABC subunit UvrA | - |
| PSEFU_RS03375 (Psefu_0670) | - | 737765..739153 (+) | 1389 | WP_013789780.1 | MFS transporter | - |
| PSEFU_RS03380 (Psefu_0671) | ssb | 739169..739663 (+) | 495 | WP_013789781.1 | single-stranded DNA-binding protein | Machinery gene |
| PSEFU_RS03385 (Psefu_0672) | - | 739766..740113 (-) | 348 | WP_013789782.1 | hypothetical protein | - |
| PSEFU_RS03390 (Psefu_0673) | - | 740355..741239 (+) | 885 | WP_013789783.1 | sugar nucleotide-binding protein | - |
| PSEFU_RS03395 (Psefu_0674) | - | 741232..742161 (+) | 930 | WP_013789784.1 | NAD-dependent epimerase/dehydratase family protein | - |
| PSEFU_RS03400 (Psefu_0675) | - | 742353..743045 (-) | 693 | WP_013789785.1 | OmpW/AlkL family protein | - |
| PSEFU_RS03405 (Psefu_0676) | - | 743167..743688 (-) | 522 | WP_013789786.1 | DUF3299 domain-containing protein | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18361.42 Da Isoelectric Point: 5.9588
>NTDB_id=40763 PSEFU_RS03380 WP_013789781.1 739169..739663(+) (ssb) [Pseudomonas fulva 12-X]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQRVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPDGAGGGEQRQSRPAPQREPQQQAPRQSAPQQQKPQPAQDYDSFDD
DIPF
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQRVEKTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPDGAGGGEQRQSRPAPQREPQQQAPRQSAPQQQKPQPAQDYDSFDD
DIPF
Nucleotide
Download Length: 495 bp
>NTDB_id=40763 PSEFU_RS03380 WP_013789781.1 739169..739663(+) (ssb) [Pseudomonas fulva 12-X]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGACAGGATCCGGAAACGCGCTATCTGCCCAGCGGCAA
TGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACGGACAAGCAGACCGGTCAGCGCGTCGAGAAGACCGAAT
GGCACCGTGTATCGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGTAAGGGCTCCCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGCTACACCACCGAAATCATTGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCTGACGGCGCTGGTGGTGGCGAGCAGCGTCAGTCGCGTCCGGCCCCGCAGCGCGAGC
CGCAGCAGCAGGCGCCACGTCAGTCCGCCCCGCAGCAGCAGAAGCCGCAGCCGGCACAGGACTACGACAGTTTCGACGAC
GATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGCGGACAGGATCCGGAAACGCGCTATCTGCCCAGCGGCAA
TGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACGGACAAGCAGACCGGTCAGCGCGTCGAGAAGACCGAAT
GGCACCGTGTATCGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGTAAGGGCTCCCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGCTACACCACCGAAATCATTGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCTGACGGCGCTGGTGGTGGCGAGCAGCGTCAGTCGCGTCCGGCCCCGCAGCGCGAGC
CGCAGCAGCAGGCGCCACGTCAGTCCGCCCCGCAGCAGCAGAAGCCGCAGCCGGCACAGGACTACGACAGTTTCGACGAC
GATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.714 |
100 |
0.616 |
| ssb | Glaesserella parasuis strain SC1401 |
46.961 |
100 |
0.518 |
| ssb | Neisseria meningitidis MC58 |
45.455 |
100 |
0.488 |
| ssb | Neisseria gonorrhoeae MS11 |
45.455 |
100 |
0.488 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.078 |
100 |
0.372 |