Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY34_RS19080 Genome accession   NZ_CP046778
Coordinates   2111077..2111607 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2106077..2116607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS19070 galU 2109024..2109896 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY34_RS19075 qstR 2110154..2110798 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY34_RS19080 ssb 2111077..2111607 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY34_RS19085 csrD 2111848..2113857 (+) 2010 WP_005497274.1 RNase E specificity factor CsrD -
  GPY34_RS19090 - 2113869..2115314 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  GPY34_RS19095 gspM 2115311..2115961 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  GPY34_RS19100 - 2115954..2116283 (+) 330 WP_020841335.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=407565 GPY34_RS19080 WP_005466625.1 2111077..2111607(+) (ssb) [Vibrio parahaemolyticus strain 2014V-1125]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=407565 GPY34_RS19080 WP_005466625.1 2111077..2111607(+) (ssb) [Vibrio parahaemolyticus strain 2014V-1125]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAGTACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAACAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment