Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY34_RS19075 Genome accession   NZ_CP046778
Coordinates   2110154..2110798 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain 2014V-1125     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2105154..2115798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY34_RS19065 uvrA 2106064..2108886 (-) 2823 WP_005497272.1 excinuclease ABC subunit UvrA -
  GPY34_RS19070 galU 2109024..2109896 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY34_RS19075 qstR 2110154..2110798 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY34_RS19080 ssb 2111077..2111607 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY34_RS19085 csrD 2111848..2113857 (+) 2010 WP_005497274.1 RNase E specificity factor CsrD -
  GPY34_RS19090 - 2113869..2115314 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=407564 GPY34_RS19075 WP_005480993.1 2110154..2110798(-) (qstR) [Vibrio parahaemolyticus strain 2014V-1125]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407564 GPY34_RS19075 WP_005480993.1 2110154..2110798(-) (qstR) [Vibrio parahaemolyticus strain 2014V-1125]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment