Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY46_RS09025 Genome accession   NZ_CP046776
Coordinates   58968..60491 (+) Length   507 a.a.
NCBI ID   WP_020904426.1    Uniprot ID   A0AA46L257
Organism   Vibrio parahaemolyticus strain AM43962     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53968..65491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS09010 ilvE 55611..56549 (-) 939 WP_015297538.1 branched-chain-amino-acid transaminase -
  GPY46_RS09015 ilvM 56562..56846 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  GPY46_RS09020 ilvG 56857..58503 (-) 1647 WP_025605024.1 acetolactate synthase 2 catalytic subunit -
  GPY46_RS09025 comM 58968..60491 (+) 1524 WP_020904426.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY46_RS09030 - 60548..61504 (-) 957 WP_020904427.1 DUF2860 domain-containing protein -
  GPY46_RS09035 - 61667..62545 (+) 879 WP_021483960.1 acyltransferase -
  GPY46_RS09040 - 62587..63189 (-) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY46_RS09045 - 63224..64210 (-) 987 WP_158128065.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55002.07 Da        Isoelectric Point: 8.4861

>NTDB_id=407496 GPY46_RS09025 WP_020904426.1 58968..60491(+) (comM) [Vibrio parahaemolyticus strain AM43962]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERPHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=407496 GPY46_RS09025 WP_020904426.1 58968..60491(+) (comM) [Vibrio parahaemolyticus strain AM43962]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCTCCGGCGGATTTACCTAAAGAAGGCGGTCGT
TTTGATTTGCCTATCGCATTGGGTATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCTCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCAGCCGCGTTGGCTGCAAGTAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAACCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACGGAACTCGTCAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTGCTTGGCAGCCGTGAGATTGAGGCATTTTGTCCGTTGCAAAAAAGCGATGCGGAGTTTCTCGAAACTGCACTCCATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTAGCCCGTACGATAGCGGATTTAGAAGGTGCTGAGCAG
ATTGAGCGGCCTCATCTGGCTGAAGCTTTGGGGTATCGCGCGATGGACCGATTGCTGAAACAACTCACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.469

100

0.665
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442

Multiple sequence alignment