Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY59_RS23280 Genome accession   NZ_CP046772
Coordinates   3085504..3086043 (-) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3080504..3091043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS23260 - 3080823..3081155 (-) 333 WP_005381196.1 hypothetical protein -
  GPY59_RS23265 gspM 3081148..3081798 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  GPY59_RS23270 - 3081795..3083240 (-) 1446 WP_054575328.1 hypothetical protein -
  GPY59_RS23275 csrD 3083252..3085261 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  GPY59_RS23280 ssb 3085504..3086043 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  GPY59_RS23285 qstR 3086321..3086965 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY59_RS23290 galU 3087125..3087997 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY59_RS23295 uvrA 3088147..3090969 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=407481 GPY59_RS23280 WP_005387798.1 3085504..3086043(-) (ssb) [Vibrio alginolyticus strain 2014V-1011]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=407481 GPY59_RS23280 WP_005387798.1 3085504..3086043(-) (ssb) [Vibrio alginolyticus strain 2014V-1011]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464

Multiple sequence alignment