Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY59_RS23285 Genome accession   NZ_CP046772
Coordinates   3086321..3086965 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081321..3091965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS23270 - 3081795..3083240 (-) 1446 WP_054575328.1 hypothetical protein -
  GPY59_RS23275 csrD 3083252..3085261 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  GPY59_RS23280 ssb 3085504..3086043 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  GPY59_RS23285 qstR 3086321..3086965 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY59_RS23290 galU 3087125..3087997 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY59_RS23295 uvrA 3088147..3090969 (+) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=407482 GPY59_RS23285 WP_005381237.1 3086321..3086965(+) (qstR) [Vibrio alginolyticus strain 2014V-1011]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407482 GPY59_RS23285 WP_005381237.1 3086321..3086965(+) (qstR) [Vibrio alginolyticus strain 2014V-1011]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACGGACGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTATATCAGATATTCAAAAAGCTATCCGTAAAGAACAGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519

Multiple sequence alignment