Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   SSUD9_RS00820 Genome accession   NC_017620
Coordinates   128028..128435 (+) Length   135 a.a.
NCBI ID   WP_014636753.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123028..133435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS00795 (SSUD9_0133) - 124429..124794 (+) 366 WP_002936568.1 DUF1033 family protein -
  SSUD9_RS00800 (SSUD9_0134) - 124829..125779 (-) 951 WP_014636751.1 S66 family peptidase -
  SSUD9_RS00805 (SSUD9_0135) comGA 125865..126815 (+) 951 WP_002936562.1 competence type IV pilus ATPase ComGA Machinery gene
  SSUD9_RS00810 (SSUD9_0136) comGB 126727..127764 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSUD9_RS00815 (SSUD9_0137) comGC 127766..128047 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  SSUD9_RS00820 (SSUD9_0138) comGD/cglD 128028..128435 (+) 408 WP_014636753.1 competence type IV pilus minor pilin ComGD Machinery gene
  SSUD9_RS00825 (SSUD9_0139) comGE 128407..128700 (+) 294 WP_002936548.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSUD9_RS00830 (SSUD9_0140) comGF/cglF 128687..129121 (+) 435 WP_002936547.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSUD9_RS00835 (SSUD9_0141) comGG 129099..129509 (+) 411 WP_002936546.1 competence type IV pilus minor pilin ComGG -
  SSUD9_RS00840 (SSUD9_0142) comGH 129566..130519 (+) 954 WP_014636755.1 class I SAM-dependent methyltransferase Machinery gene
  SSUD9_RS00845 (SSUD9_0143) - 130569..131756 (+) 1188 WP_002936543.1 acetate kinase -
  SSUD9_RS00850 (SSUD9_0144) - 132071..132622 (+) 552 WP_014636756.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15326.63 Da        Isoelectric Point: 9.6573

>NTDB_id=40746 SSUD9_RS00820 WP_014636753.1 128028..128435(+) (comGD/cglD) [Streptococcus suis D9]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASFHQKVNLAIGGQEVTNGYQ
AVQVPRNIEVLEGKTITLEEDGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=40746 SSUD9_RS00820 WP_014636753.1 128028..128435(+) (comGD/cglD) [Streptococcus suis D9]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTTCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTACAGGTACCCAGAAATATAGAAGTGTTGGAAGGGAAGACCATTACACTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD Streptococcus mutans UA140

45.736

95.556

0.437
  comGD Streptococcus mutans UA159

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43

Multiple sequence alignment