Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GPY10_RS08250 | Genome accession | NZ_CP046767 |
| Coordinates | 1772833..1773363 (-) | Length | 176 a.a. |
| NCBI ID | WP_020332215.1 | Uniprot ID | S7JBV3 |
| Organism | Vibrio fluvialis strain 2013V-1300 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1767833..1778363
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY10_RS08230 | - | 1768296..1768574 (-) | 279 | WP_172560579.1 | MSHA biogenesis protein MshK | - |
| GPY10_RS08235 | - | 1768600..1769250 (-) | 651 | WP_020433242.1 | MSHA biogenesis protein MshJ | - |
| GPY10_RS08240 | - | 1769247..1770695 (-) | 1449 | WP_158151524.1 | MSHA biogenesis protein MshI | - |
| GPY10_RS08245 | csrD | 1770703..1772697 (-) | 1995 | WP_020433244.1 | RNase E specificity factor CsrD | - |
| GPY10_RS08250 | ssb | 1772833..1773363 (-) | 531 | WP_020332215.1 | single-stranded DNA-binding protein | Machinery gene |
| GPY10_RS08255 | qstR | 1773646..1774296 (+) | 651 | WP_158151525.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| GPY10_RS08260 | galU | 1774424..1775293 (+) | 870 | WP_020433248.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| GPY10_RS08265 | uvrA | 1775431..1778253 (+) | 2823 | WP_158151526.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19526.69 Da Isoelectric Point: 5.7626
>NTDB_id=407414 GPY10_RS08250 WP_020332215.1 1772833..1773363(-) (ssb) [Vibrio fluvialis strain 2013V-1300]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=407414 GPY10_RS08250 WP_020332215.1 1772833..1773363(-) (ssb) [Vibrio fluvialis strain 2013V-1300]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTATATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTATATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGTCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
89.385 |
100 |
0.909 |
| ssb | Glaesserella parasuis strain SC1401 |
55.738 |
100 |
0.58 |
| ssb | Neisseria meningitidis MC58 |
46.739 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
46.739 |
100 |
0.489 |