Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY10_RS08255 Genome accession   NZ_CP046767
Coordinates   1773646..1774296 (+) Length   216 a.a.
NCBI ID   WP_158151525.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768646..1779296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS08240 - 1769247..1770695 (-) 1449 WP_158151524.1 MSHA biogenesis protein MshI -
  GPY10_RS08245 csrD 1770703..1772697 (-) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  GPY10_RS08250 ssb 1772833..1773363 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  GPY10_RS08255 qstR 1773646..1774296 (+) 651 WP_158151525.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY10_RS08260 galU 1774424..1775293 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY10_RS08265 uvrA 1775431..1778253 (+) 2823 WP_158151526.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24895.71 Da        Isoelectric Point: 9.2330

>NTDB_id=407415 GPY10_RS08255 WP_158151525.1 1773646..1774296(+) (qstR) [Vibrio fluvialis strain 2013V-1300]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQLSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=407415 GPY10_RS08255 WP_158151525.1 1773646..1774296(+) (qstR) [Vibrio fluvialis strain 2013V-1300]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACTCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCTTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment