Detailed information NTG0040733

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SSUD9_RS00340
• Genome accession: NC_017620
• Coordinates: 56932..57933 (+)
• Length: 333 a.a.
• NCBI ID: WP_002935300.1
• Uniprot ID: -
• Organism: Streptococcus suis D9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 51932..62933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUD9_RS00315 (SSUD9_0047)	-	51985..52563 (+)	579	WP_002935308.1	CPBP family intramembrane glutamic endopeptidase	-
SSUD9_RS00320 (SSUD9_0048)	-	52578..53006 (+)	429	WP_002935307.1	Msa family membrane protein	-
SSUD9_RS00325 (SSUD9_0049)	-	52999..53871 (+)	873	WP_002935305.1	ABC transporter ATP-binding protein	-
SSUD9_RS00330 (SSUD9_0050)	-	53877..54647 (+)	771	WP_002935304.1	membrane protein	-
SSUD9_RS00335 (SSUD9_0051)	-	54650..56362 (+)	1713	WP_002935303.1	ABC transporter ATP-binding protein	-
SSUD9_RS11460 (SSUD9_0052)	-	56464..56637 (+)	174	WP_014636741.1	hypothetical protein	-
SSUD9_RS00340 (SSUD9_0053)	ruvB	56932..57933 (+)	1002	WP_002935300.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SSUD9_RS00345 (SSUD9_0054)	-	57933..58679 (+)	747	WP_002935299.1	GNAT family N-acetyltransferase	-
SSUD9_RS00350 (SSUD9_0055)	-	58681..59319 (+)	639	WP_002935298.1	HAD-IA family hydrolase	-
SSUD9_RS00355 (SSUD9_0056)	comR	59566..60483 (+)	918	WP_002935296.1	helix-turn-helix domain-containing protein	Regulator
SSUD9_RS00360 (SSUD9_0058)	-	60892..62094 (-)	1203	WP_002935295.1	IS110-like element ISSsu7 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37640.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=40733 SSUD9_RS00340 WP_002935300.1 56932..57933(+) (ruvB) [Streptococcus suis D9]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=40733 SSUD9_RS00340 WP_002935300.1 56932..57933(+) (ruvB) [Streptococcus suis D9]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGCTCAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTTTTTGGCCCACCGGGTCTGGGGAAGACCACCATGGCCTTTGTCATTGCCAACGAATTGGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCGGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCGTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTATCCAATCCTCTGCGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGAACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGCTTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGAGACGGCCTGATT
GATGATAACATTACGGACAAGGCCCTGACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAACACCTGGGCTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.368	98.799	0.508
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474