Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY31_RS09745 Genome accession   NZ_CP046760
Coordinates   225382..225912 (+) Length   176 a.a.
NCBI ID   WP_069545340.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 220382..230912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS09735 galU 223329..224201 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY31_RS09740 qstR 224459..225103 (-) 645 WP_025498808.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY31_RS09745 ssb 225382..225912 (+) 531 WP_069545340.1 single-stranded DNA-binding protein Machinery gene
  GPY31_RS09750 csrD 226153..228162 (+) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  GPY31_RS09755 - 228174..229619 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  GPY31_RS09760 gspM 229616..230266 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  GPY31_RS09765 - 230259..230588 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19607.67 Da        Isoelectric Point: 4.9371

>NTDB_id=407270 GPY31_RS09745 WP_069545340.1 225382..225912(+) (ssb) [Vibrio parahaemolyticus strain AM51552]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQERYSTEVVVQGFNGVMQMLGGRAQGSAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=407270 GPY31_RS09745 WP_069545340.1 225382..225912(+) (ssb) [Vibrio parahaemolyticus strain AM51552]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGAACGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTAGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCCCCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.888

100

0.812
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.602
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment