Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY31_RS09740 Genome accession   NZ_CP046760
Coordinates   224459..225103 (-) Length   214 a.a.
NCBI ID   WP_025498808.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 219459..230103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS09730 uvrA 220369..223191 (-) 2823 WP_042772712.1 excinuclease ABC subunit UvrA -
  GPY31_RS09735 galU 223329..224201 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY31_RS09740 qstR 224459..225103 (-) 645 WP_025498808.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY31_RS09745 ssb 225382..225912 (+) 531 WP_069545340.1 single-stranded DNA-binding protein Machinery gene
  GPY31_RS09750 csrD 226153..228162 (+) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  GPY31_RS09755 - 228174..229619 (+) 1446 WP_005481017.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24368.17 Da        Isoelectric Point: 8.7760

>NTDB_id=407269 GPY31_RS09740 WP_025498808.1 224459..225103(-) (qstR) [Vibrio parahaemolyticus strain AM51552]
MRKSAYARKLFLISIEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407269 GPY31_RS09740 WP_025498808.1 224459..225103(-) (qstR) [Vibrio parahaemolyticus strain AM51552]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATCGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGTGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment