Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPY20_RS11640 | Genome accession | NZ_CP046756 |
| Coordinates | 991417..992007 (+) | Length | 196 a.a. |
| NCBI ID | WP_020429291.1 | Uniprot ID | A0AAX2LK04 |
| Organism | Vibrio fluvialis strain 2015AW-0077 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 986417..997007
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY20_RS11625 | - | 987217..989697 (-) | 2481 | WP_158129944.1 | PBP1A family penicillin-binding protein | - |
| GPY20_RS11630 | pilM | 989840..990844 (+) | 1005 | WP_158125470.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY20_RS11635 | pilN | 990834..991424 (+) | 591 | WP_100267596.1 | PilN domain-containing protein | Machinery gene |
| GPY20_RS11640 | pilO | 991417..992007 (+) | 591 | WP_020429291.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY20_RS11645 | pilP | 991997..992509 (+) | 513 | WP_020329446.1 | pilus assembly protein PilP | Machinery gene |
| GPY20_RS11650 | pilQ | 992534..994270 (+) | 1737 | WP_233976036.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPY20_RS11655 | aroK | 994458..994976 (+) | 519 | WP_004728569.1 | shikimate kinase AroK | - |
| GPY20_RS11660 | aroB | 995004..996089 (+) | 1086 | WP_158129945.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22722.10 Da Isoelectric Point: 4.7023
>NTDB_id=407239 GPY20_RS11640 WP_020429291.1 991417..992007(+) (pilO) [Vibrio fluvialis strain 2015AW-0077]
MANLQELELDEIAEWPLLPQLAVLLLLVLALQGAGYWLYMLPKQDALEGLKQQEQTLKSTIRIKASKVATLPKLKTQLDE
LAERYDFLLRQLPVQKELASMLASVNELGLENTLTFTRIDWGEKQNQEFLYRLPLNIELTGNYHNIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEK
MANLQELELDEIAEWPLLPQLAVLLLLVLALQGAGYWLYMLPKQDALEGLKQQEQTLKSTIRIKASKVATLPKLKTQLDE
LAERYDFLLRQLPVQKELASMLASVNELGLENTLTFTRIDWGEKQNQEFLYRLPLNIELTGNYHNIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=407239 GPY20_RS11640 WP_020429291.1 991417..992007(+) (pilO) [Vibrio fluvialis strain 2015AW-0077]
ATGGCTAACTTGCAGGAACTGGAACTGGATGAAATCGCTGAATGGCCTTTGTTGCCTCAGCTGGCCGTGTTATTACTGCT
GGTTCTGGCGCTGCAAGGTGCGGGCTATTGGTTATATATGTTGCCCAAGCAGGATGCGCTCGAAGGTTTAAAACAGCAGG
AACAAACGCTCAAATCGACGATACGTATCAAAGCCAGCAAAGTGGCCACGTTACCCAAACTCAAAACCCAACTGGATGAA
CTGGCAGAACGGTATGACTTCCTGCTGCGTCAACTGCCGGTGCAAAAAGAGCTTGCCAGTATGCTGGCGTCGGTTAACGA
GCTGGGGCTGGAAAATACGCTGACGTTCACGCGGATTGACTGGGGGGAGAAGCAGAATCAGGAATTCCTCTATCGTCTGC
CACTCAATATCGAACTGACCGGCAATTATCACAACATCGGCGACTTTTCCGAAGCGATTGCGCGCTTGCCACGCATCATC
AACTTTGACGATGTCGATTGGCAGCGCGTCAGTCAGGAGAGCAGCACGCTGCACTTTCGCGTCCGAGCTTACACCTATCA
GTTCAAACCGGAGGTGAGCGATGAAAAATAA
ATGGCTAACTTGCAGGAACTGGAACTGGATGAAATCGCTGAATGGCCTTTGTTGCCTCAGCTGGCCGTGTTATTACTGCT
GGTTCTGGCGCTGCAAGGTGCGGGCTATTGGTTATATATGTTGCCCAAGCAGGATGCGCTCGAAGGTTTAAAACAGCAGG
AACAAACGCTCAAATCGACGATACGTATCAAAGCCAGCAAAGTGGCCACGTTACCCAAACTCAAAACCCAACTGGATGAA
CTGGCAGAACGGTATGACTTCCTGCTGCGTCAACTGCCGGTGCAAAAAGAGCTTGCCAGTATGCTGGCGTCGGTTAACGA
GCTGGGGCTGGAAAATACGCTGACGTTCACGCGGATTGACTGGGGGGAGAAGCAGAATCAGGAATTCCTCTATCGTCTGC
CACTCAATATCGAACTGACCGGCAATTATCACAACATCGGCGACTTTTCCGAAGCGATTGCGCGCTTGCCACGCATCATC
AACTTTGACGATGTCGATTGGCAGCGCGTCAGTCAGGAGAGCAGCACGCTGCACTTTCGCGTCCGAGCTTACACCTATCA
GTTCAAACCGGAGGTGAGCGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
79.592 |
100 |
0.796 |
| pilO | Vibrio campbellii strain DS40M4 |
68.947 |
96.939 |
0.668 |