Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY20_RS10120 Genome accession   NZ_CP046756
Coordinates   670627..672150 (-) Length   507 a.a.
NCBI ID   WP_020430404.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 665627..677150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS10095 - 665976..666242 (+) 267 WP_020332578.1 DUF1040 family protein -
  GPY20_RS10100 ccoG 666504..667928 (+) 1425 WP_020332579.1 cytochrome c oxidase accessory protein CcoG -
  GPY20_RS10105 - 667973..668959 (+) 987 WP_143683444.1 serine/threonine protein kinase -
  GPY20_RS10110 - 668990..669589 (+) 600 WP_024374484.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY20_RS10115 - 669630..670523 (-) 894 WP_100268757.1 acyltransferase -
  GPY20_RS10120 comM 670627..672150 (-) 1524 WP_020430404.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY20_RS10125 ilvG 672634..674280 (+) 1647 WP_020332584.1 acetolactate synthase 2 catalytic subunit -
  GPY20_RS10130 ilvM 674292..674576 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  GPY20_RS10135 ilvE 674588..675529 (+) 942 WP_020332585.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55092.08 Da        Isoelectric Point: 8.5030

>NTDB_id=407231 GPY20_RS10120 WP_020430404.1 670627..672150(-) (comM) [Vibrio fluvialis strain 2015AW-0077]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDARDASVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGDR
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=407231 GPY20_RS10120 WP_020430404.1 670627..672150(-) (comM) [Vibrio fluvialis strain 2015AW-0077]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCCTCGGATCAGATTGCCCGCACCCAATTGAGCGACCATGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTATGTGCCGACTTATGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGCGCGCGACGCCAGCGTACCGCG
TGAGCGCGACTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCAGCGGCGGGCAACCACAACC
TGTTGTTTCTTGGCCCGCCGGGCACGGGTAAAACTATGTTGGCCTCGCGCCTGTGCGATCTGCTGCCGGAGATGACCGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCAGCGCTGGTGGGCGGCGGCACCATTCCTCGTCCCGGAGAAATCTCACTTG
CTCACAATGGCCTGTTGTTTCTGGATGAAATGCCGGAATTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCGGGCGAGATTATTATTTCCCGCGCGCAGGGCAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACCGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGTCGTTTATCCG
GGCCGCTGCTGGATCGCTTTGATATGTCGATCGAAATTCCGGCGTTGCCCAAAGGCACTTTGTCGCACGGCGGCGACCGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGCAGTGGCAAAGTGAATGC
GCTGCTGCAAAGCCGTGAAATCGAAACTTATTGCCCGCTCAGTCAGCCGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GTCTGGGGTTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACTATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGGGCGCATCTGGCCGAAGCGCTCGGGTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.349

100

0.893
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.272

100

0.663
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428

Multiple sequence alignment