Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY20_RS08705 Genome accession   NZ_CP046756
Coordinates   373954..374484 (-) Length   176 a.a.
NCBI ID   WP_020332215.1    Uniprot ID   S7JBV3
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 368954..379484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS08685 - 369417..369695 (-) 279 WP_199252531.1 MSHA biogenesis protein MshK -
  GPY20_RS08690 - 369721..370371 (-) 651 WP_020332218.1 MSHA biogenesis protein MshJ -
  GPY20_RS08695 - 370368..371816 (-) 1449 WP_158129796.1 MSHA biogenesis protein MshI -
  GPY20_RS08700 csrD 371824..373818 (-) 1995 WP_158129797.1 RNase E specificity factor CsrD -
  GPY20_RS08705 ssb 373954..374484 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  GPY20_RS08710 qstR 374767..375417 (+) 651 WP_158129798.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY20_RS08715 galU 375545..376414 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY20_RS08720 uvrA 376552..379374 (+) 2823 WP_158129799.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19526.69 Da        Isoelectric Point: 5.7626

>NTDB_id=407227 GPY20_RS08705 WP_020332215.1 373954..374484(-) (ssb) [Vibrio fluvialis strain 2015AW-0077]
MATRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSESWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEIVVQGYNGTMQMLGGRQQGGMPAQGGGMNQPQQGGWGQPQQPAMQQHKPMQQQAPQQSQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=407227 GPY20_RS08705 WP_020332215.1 373954..374484(-) (ssb) [Vibrio fluvialis strain 2015AW-0077]
ATGGCAACCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACTTGGGTAGTGATCCGGAAGTTCGCTATATGCCAAGCGG
TGGCGCAGTTGCGAACATCACTGTAGCCACGTCAGAATCATGGCGTGATAAAGCAACCGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTCGCTCTGTATGGAAAACTCGCAGAAGTCGCAGGTGAGTATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAGGACCGCTACTCAACCGAAATCGTTGTACAGGGCTA
CAATGGCACTATGCAGATGCTCGGTGGCCGTCAGCAAGGTGGTATGCCTGCTCAGGGTGGCGGTATGAACCAGCCACAAC
AAGGCGGTTGGGGACAGCCTCAACAACCAGCCATGCAGCAGCACAAACCAATGCAGCAGCAGGCACCGCAGCAATCTCAG
CCGCAATACAATGAACCGCCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7JBV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

89.385

100

0.909
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

46.739

100

0.489
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.489

Multiple sequence alignment