Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY20_RS08710 Genome accession   NZ_CP046756
Coordinates   374767..375417 (+) Length   216 a.a.
NCBI ID   WP_158129798.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 369767..380417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS08695 - 370368..371816 (-) 1449 WP_158129796.1 MSHA biogenesis protein MshI -
  GPY20_RS08700 csrD 371824..373818 (-) 1995 WP_158129797.1 RNase E specificity factor CsrD -
  GPY20_RS08705 ssb 373954..374484 (-) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  GPY20_RS08710 qstR 374767..375417 (+) 651 WP_158129798.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY20_RS08715 galU 375545..376414 (+) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY20_RS08720 uvrA 376552..379374 (+) 2823 WP_158129799.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24810.56 Da        Isoelectric Point: 8.8931

>NTDB_id=407228 GPY20_RS08710 WP_158129798.1 374767..375417(+) (qstR) [Vibrio fluvialis strain 2015AW-0077]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIASGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=407228 GPY20_RS08710 WP_158129798.1 374767..375417(+) (qstR) [Vibrio fluvialis strain 2015AW-0077]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGAGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGCCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGCGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCTTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment