Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPX90_RS12125 Genome accession   NZ_CP046752
Coordinates   1490138..1491670 (+) Length   510 a.a.
NCBI ID   WP_065171004.1    Uniprot ID   A0A1X9U4U6
Organism   Photobacterium damselae strain 9046-81     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1485138..1496670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX90_RS12110 - 1486723..1487652 (-) 930 WP_158135508.1 branched-chain amino acid transaminase -
  GPX90_RS12115 ilvM 1487692..1487949 (-) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  GPX90_RS12120 ilvG 1487952..1489598 (-) 1647 WP_158135509.1 acetolactate synthase 2 catalytic subunit -
  GPX90_RS12125 comM 1490138..1491670 (+) 1533 WP_065171004.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPX90_RS12130 - 1491754..1492353 (-) 600 WP_370466075.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPX90_RS12135 - 1492443..1493432 (-) 990 WP_068945793.1 serine/threonine protein kinase -
  GPX90_RS12140 ccoG 1493475..1494812 (-) 1338 WP_158135510.1 cytochrome c oxidase accessory protein CcoG -
  GPX90_RS12145 - 1495001..1495267 (-) 267 WP_005302176.1 YihD family protein -
  GPX90_RS12150 - 1495443..1495616 (-) 174 WP_005302173.1 hypothetical protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55121.40 Da        Isoelectric Point: 8.2787

>NTDB_id=407155 GPX90_RS12125 WP_065171004.1 1490138..1491670(+) (comM) [Photobacterium damselae strain 9046-81]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDQRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=407155 GPX90_RS12125 WP_065171004.1 1490138..1491670(+) (comM) [Photobacterium damselae strain 9046-81]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTAACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCTCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCAGGACAAATACCCGCAGAATCGCTGCATAAATACGAATTTTT
AGGGGAGTTGGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGGGCGCTGCCTGCTGCTCTTGCTGCATTAAAAGCGAAAA
GGTGTTTGATTGTCCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGTGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCCCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCCGGTG
GCCATAACCTTCTGTTTCTTGGCCCTCCTGGAACGGGAAAAACCATGTTAGCCTCTCGCTTATGTGATTTATTACCCCCT
ATGAGCCATGATGAGGCGTTAGAAACCGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGAGCACCTCATCATTCAAGCTCTATGGCTGCCTTAGTTGGGGGTGGTTCAATTCCAAGGCCAGGAGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCACGGGCAACCAGTAAAGCAACCTTTCCGGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AGCTCTCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCTGCTCTGCCGAAAGGTACTTTAGCTCAAGGT
GGTGAGCGCGGTGAGAGTACTCCAGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCAGCGAGCAGGAAA
AGTGAATGCTCGACTTTCGACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCACCGTATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCGATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9U4U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427

Multiple sequence alignment