Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPX93_RS11880 | Genome accession | NZ_CP046749 |
| Coordinates | 2604811..2605401 (-) | Length | 196 a.a. |
| NCBI ID | WP_000157688.1 | Uniprot ID | A0A655VUM8 |
| Organism | Vibrio cholerae strain 2015V-1118 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2599811..2610401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX93_RS11860 | aroB | 2600738..2601823 (-) | 1086 | WP_184482921.1 | 3-dehydroquinate synthase | - |
| GPX93_RS11865 | aroK | 2601851..2602375 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| GPX93_RS11870 | pilQ | 2602562..2604277 (-) | 1716 | WP_162808987.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPX93_RS11875 | pilP | 2604303..2604821 (-) | 519 | WP_123163006.1 | pilus assembly protein PilP | Machinery gene |
| GPX93_RS11880 | pilO | 2604811..2605401 (-) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPX93_RS11885 | pilN | 2605394..2605978 (-) | 585 | WP_162811704.1 | PilN domain-containing protein | Machinery gene |
| GPX93_RS11890 | pilM | 2605968..2606984 (-) | 1017 | WP_123163007.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPX93_RS11895 | - | 2607127..2609604 (+) | 2478 | WP_184482924.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22891.30 Da Isoelectric Point: 4.4169
>NTDB_id=407114 GPX93_RS11880 WP_000157688.1 2604811..2605401(-) (pilO) [Vibrio cholerae strain 2015V-1118]
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=407114 GPX93_RS11880 WP_000157688.1 2604811..2605401(-) (pilO) [Vibrio cholerae strain 2015V-1118]
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTGCTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTTAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTGCTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGATGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGAAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTTAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
99.49 |
100 |
0.995 |
| pilO | Vibrio campbellii strain DS40M4 |
71.429 |
96.429 |
0.689 |